Desulfovibrio vulgaris Hildenborough Module 288 Residual: 0.42

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Summary

Residual: 0.42 Score: -79.2749 version: dvh_cmonkey_11_Mar_02

Members

DVU0165 Oligopeptide/dipeptide ABC transporter, ATP-binding protein

Details for DVU0165 - Oligopeptide/dipeptide ABC transporter, ATP-binding protein

GO Terms: GO:0005524, GO:0016887, GO:0016020, GO:0015197

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0165

Tuberculist Genomic Region

DVUA0070 Conserved domain protein

Details for DVUA0070 - Conserved domain protein

GO Terms: GO:0008168

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVUA0070

Tuberculist Genomic Region

DVU0166 Oligopeptide/dipeptide ABC transporter, ATP-binding protein

Details for DVU0166 - Oligopeptide/dipeptide ABC transporter, ATP-binding protein

GO Terms: GO:0005524, GO:0016887, GO:0016020, GO:0015197

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0166

Tuberculist Genomic Region

DVU0386 Amino acid ABC transporter, periplasmic amino acid-binding protein

Details for DVU0386 - Amino acid ABC transporter, periplasmic amino acid-binding protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0386

Tuberculist Genomic Region

DVU0167 Oligopeptide/dipeptide ABC transporter, permease protein

Details for DVU0167 - Oligopeptide/dipeptide ABC transporter, permease protein

GO Terms: GO:0016021, GO:0005886, GO:0006810

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0167

Tuberculist Genomic Region

DVU0387 Amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family

Details for DVU0387 - Amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family

GO Terms: GO:0016021, GO:0005886, GO:0005215

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0387

Tuberculist Genomic Region

DVU0168 Oligopeptide/dipeptide ABC transporter, permease protein

Details for DVU0168 - Oligopeptide/dipeptide ABC transporter, permease protein

GO Terms: GO:0016021, GO:0006810

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0168

Tuberculist Genomic Region

DVU0388 Amino acid ABC transporter, ATP-binding protein

Details for DVU0388 - Amino acid ABC transporter, ATP-binding protein

GO Terms: GO:0005524, GO:0016887

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0388

Tuberculist Genomic Region

DVU0384 Flavoredoxin

Details for DVU0384 - Flavoredoxin

GO Terms: GO:0010181, GO:0042602

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0384

Tuberculist Genomic Region

DVU1038 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase

Details for DVU1038 - 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase

GO Terms: GO:0003949, GO:0005737, GO:0000105

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1038

Tuberculist Genomic Region

DVU0390 Glycolate oxidase, subunit GlcD, putative

Details for DVU0390 - Glycolate oxidase, subunit GlcD, putative

GO Terms: GO:0008762, GO:0050660

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0390

Tuberculist Genomic Region

DVU1351 Membrane protein, MarC family

Details for DVU1351 - Membrane protein, MarC family

GO Terms: GO:0016021

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1351

Tuberculist Genomic Region

DVU1089 Alanine--tRNA ligase

Details for DVU1089 - Alanine--tRNA ligase

GO Terms: GO:0005524, GO:0004813, GO:0006419, GO:0005737, GO:0000049, GO:0008270

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1089

Tuberculist Genomic Region

DVUA0074 Sulfotransferase family protein

Details for DVUA0074 - Sulfotransferase family protein

GO Terms: GO:0008146

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVUA0074

Tuberculist Genomic Region

DVU1260 Outer membrane protein P1, putative

Details for DVU1260 - Outer membrane protein P1, putative

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1260

Tuberculist Genomic Region

DVUA0076 ABC transporter, ATP-binding protein

Details for DVUA0076 - ABC transporter, ATP-binding protein

GO Terms: GO:0005524, GO:0016887

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVUA0076

Tuberculist Genomic Region

DVUA0069 GtrA family protein, selenocysteine-containing

Details for DVUA0069 - GtrA family protein, selenocysteine-containing

GO Terms: GO:0016021, GO:0000271, GO:0006810

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVUA0069

Tuberculist Genomic Region

Displaying 1 - 17 of 17

Motifs

Motif 1: e-value: 0.86 e-value: 4.1

Module Plots

Regulation

Regulator Interaction Influence Weight Other Influences
[field_regulator_taxonomy_regulat_1] up-regulates 0.12

DVU0597 knockout

DVU1754

Uncharacterized protein
 down-regulates -0.12

DVU1754

DVU2953

Transcriptional regulator, GntR family
 down-regulates -0.12

DVU2953

DVU3142

Sigma-54 dependent transcriptional regulator
 down-regulates -0.10

DVU3142
[field_regulator_taxonomy_regulat_1] up-regulates 0.10

Thiosulfate

GO Enrichment

Category: CC
Category GO ID GO Term Annotated Expected Significant p-value
CC GO:0016021 integral component of membrane 184 2.34 5 0.0220
CC GO:0031224 intrinsic component of membrane 184 2.34 5 0.0220
CC GO:0044425 membrane part 188 2.39 5 0.0240
Category: MF
Category GO ID GO Term Annotated Expected Significant p-value
MF GO:0016860 intramolecular oxidoreductase activity 3 0.02 1 0.0233
MF GO:0016861 intramolecular oxidoreductase activity, ... 3 0.02 1 0.0233
MF GO:0032553 ribonucleotide binding 345 2.69 6 0.0279
MF GO:0097367 carbohydrate derivative binding 345 2.69 6 0.0279
MF GO:0008762 UDP-N-acetylmuramate dehydrogenase activ... 5 0.04 1 0.0385
MF GO:0043168 anion binding 371 2.90 6 0.0395
MF GO:0000166 nucleotide binding 377 2.94 6 0.0427
MF GO:1901265 nucleoside phosphate binding 377 2.94 6 0.0427
MF GO:0036094 small molecule binding 383 2.99 6 0.0460

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