Desulfovibrio vulgaris Hildenborough Module 325 Residual: 0.30

×

Error message

  • Unable to create CTools CSS cache directory. Check the permissions on your files directory.
  • Unable to create CTools CSS cache directory. Check the permissions on your files directory.

Summary

Residual: 0.30 Score: -89.4854 version: dvh_cmonkey_11_Mar_02

Members

DVU1119 Virion morphogenesis protein

Details for DVU1119 - Virion morphogenesis protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1119

Tuberculist Genomic Region

DVU1318 50S ribosomal protein L6

Details for DVU1318 - 50S ribosomal protein L6

GO Terms: GO:0019843, GO:0005840, GO:0003735, GO:0006412

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1318

Tuberculist Genomic Region

DVU1311 50S ribosomal protein L29

Details for DVU1311 - 50S ribosomal protein L29

GO Terms: GO:0005840, GO:0003735, GO:0006412

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1311

Tuberculist Genomic Region

DVU1319 50S ribosomal protein L18

Details for DVU1319 - 50S ribosomal protein L18

GO Terms: GO:0019843, GO:0005840, GO:0003735, GO:0006412

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1319

Tuberculist Genomic Region

DVU1312 30S ribosomal protein S17

Details for DVU1312 - 30S ribosomal protein S17

GO Terms: GO:0019843, GO:0005840, GO:0003735, GO:0006412

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1312

Tuberculist Genomic Region

DVU1308 50S ribosomal protein L22

Details for DVU1308 - 50S ribosomal protein L22

GO Terms: GO:0015934, GO:0019843, GO:0003735, GO:0006412

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1308

Tuberculist Genomic Region

DVU1316 30S ribosomal protein S14 type Z

Details for DVU1316 - 30S ribosomal protein S14 type Z

GO Terms: GO:0019843, GO:0005840, GO:0003735, GO:0006412, GO:0008270

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1316

Tuberculist Genomic Region

DVU1309 30S ribosomal protein S3

Details for DVU1309 - 30S ribosomal protein S3

GO Terms: GO:0003729, GO:0019843, GO:0015935, GO:0003735, GO:0006412

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1309

Tuberculist Genomic Region

DVU1317 30S ribosomal protein S8

Details for DVU1317 - 30S ribosomal protein S8

GO Terms: GO:0019843, GO:0005840, GO:0003735, GO:0006412

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1317

Tuberculist Genomic Region

DVU1320 30S ribosomal protein S5

Details for DVU1320 - 30S ribosomal protein S5

GO Terms: GO:0019843, GO:0015935, GO:0003735, GO:0006412

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1320

Tuberculist Genomic Region

Displaying 1 - 10 of 10

Motifs

Motif 1:

Module Plots

Regulation

Regulator Interaction Influence Weight Other Influences

DVU0744

Sigma-54 dependent transcriptional regulator/response regulator
 down-regulates -0.42

DVU0744

DVU1340

Transcriptional regulator, Fur family
 down-regulates -0.17

DVU1340

DVU1517

Transcriptional regulator cII, putative
 down-regulates -0.15

DVU1517

DVU2557

Bifunctional ligase/repressor BirA
down-regulates -0.24

DVU2557

DVU2802

Transcriptional regulator, GntR family
 down-regulates -0.21

DVU2802

DVU2835

Transcriptional regulator, putative
 down-regulates -0.65

DVU2835

DVU3142

Sigma-54 dependent transcriptional regulator
 down-regulates -0.35

DVU3142

DVU3220

Sigma-54 dependent transcriptional regulator/response regulator
 down-regulates -0.17

DVU3220

GO Enrichment

Category: CC
Category GO ID GO Term Annotated Expected Significant p-value
CC GO:0005840 ribosome 23 0.12 2 0.0033
CC GO:0030529 ribonucleoprotein complex 23 0.12 2 0.0033
CC GO:0043229 intracellular organelle 23 0.12 2 0.0033
CC GO:0043232 intracellular non-membrane-bounded organ... 23 0.12 2 0.0033
CC GO:0044444 cytoplasmic part 27 0.14 2 0.0046
CC GO:0032991 macromolecular complex 33 0.17 2 0.0069
CC GO:0043226 organelle 48 0.24 2 0.0146
CC GO:0043228 non-membrane-bounded organelle 48 0.24 2 0.0146
CC GO:0015934 large ribosomal subunit 7 0.04 1 0.0354
CC GO:0044391 ribosomal subunit 8 0.04 1 0.0403
CC GO:0044446 intracellular organelle part 8 0.04 1 0.0403
CC GO:0005737 cytoplasm 86 0.44 2 0.0475
Category: MF
Category GO ID GO Term Annotated Expected Significant p-value
MF GO:0097159 organic cyclic compound binding 611 3.34 7 0.0055
MF GO:1901363 heterocyclic compound binding 611 3.34 7 0.0055
MF GO:0005488 binding 789 4.31 7 0.0333

Comments

Log in to post comments