Methanococcus maripaludis S2 Module 3 Residual: 0.13

×

Error message

  • Unable to create CTools CSS cache directory. Check the permissions on your files directory.
  • Unable to create CTools CSS cache directory. Check the permissions on your files directory.

Summary

Residual: 0.13 Score: -25.1845 version: mmp_cmonkey_11_Oct_11

Members

MMP0442 conserved hypothetical protein (NCBI)

Details for MMP0442 - conserved hypothetical protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0442

Tuberculist Genomic Region

MMP1289 Ribosomal protein L10E (NCBI)

Details for MMP1289 - Ribosomal protein L10E (NCBI)

GO Terms: GO:0006412, GO:0005840, GO:0003735

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1289

Tuberculist Genomic Region

MMP0443 SSU ribosomal protein S24E (NCBI)

Details for MMP0443 - SSU ribosomal protein S24E (NCBI)

GO Terms: GO:0006412, GO:0005840, GO:0000166, GO:0003735

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0443

Tuberculist Genomic Region

MMP1402 hypothetical protein (NCBI)

Details for MMP1402 - hypothetical protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1402

Tuberculist Genomic Region

MMP0444 SSU ribosomal protein S27AE (NCBI)

Details for MMP0444 - SSU ribosomal protein S27AE (NCBI)

GO Terms: GO:0006412, GO:0005840, GO:0003735, GO:0016787

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0444

Tuberculist Genomic Region

MMP1403 LSU ribosomal protein L22P (NCBI)

Details for MMP1403 - LSU ribosomal protein L22P (NCBI)

GO Terms: GO:0006412, GO:0015934, GO:0003735

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1403

Tuberculist Genomic Region

MMP0667 SSU Ribosomal protein S2 (NCBI)

Details for MMP0667 - SSU Ribosomal protein S2 (NCBI)

GO Terms: GO:0006412, GO:0015935, GO:0003735

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0667

Tuberculist Genomic Region

MMP1404 SSU ribosomal protein S3P (NCBI)

Details for MMP1404 - SSU ribosomal protein S3P (NCBI)

GO Terms: GO:0006412, GO:0015935, GO:0003723, GO:0003735

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1404

Tuberculist Genomic Region

MMP0668 conserved hypothetical protein (NCBI)

Details for MMP0668 - conserved hypothetical protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0668

Tuberculist Genomic Region

MMP1405 LSU ribosomal protein L29P (NCBI)

Details for MMP1405 - LSU ribosomal protein L29P (NCBI)

GO Terms: GO:0006412, GO:0005840, GO:0003735

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1405

Tuberculist Genomic Region

MMP0669 SSU ribosomal protein S3AE (NCBI)

Details for MMP0669 - SSU ribosomal protein S3AE (NCBI)

GO Terms: GO:0006412, GO:0005840, GO:0003735

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0669

Tuberculist Genomic Region

Displaying 1 - 11 of 11

Motifs

Motif 1: e-value: 390 e-value: 1100

Module Plots

Regulation

Regulator Interaction Influence Weight Other Influences

MMP0052

Conserved Hypothetical protein with 2 CBS domains (NCBI)

MMP0257

TATA-binding protein (TBP) (NCBI)
 down-regulates -0.40

MMP0052

MMP0257

MMP0568

transcriptional regulator related protein (NCBI)
 up-regulates 0.33

MMP0568

MMP0052

Conserved Hypothetical protein with 2 CBS domains (NCBI)
 down-regulates -0.21

MMP0052

MMP0097

Transcriptional regulator protein, Helix-turn-helix motif (NCBI)

MMP0678

Predicted transcriptional regulator; Helix-turn-helix motif (NCBI)
 down-regulates -0.18

MMP0097

MMP0678

MMP1015

Transcription factor CBF/NF-Y/archaeal histone:Histone-fold/TFIID-TAF/NF-Y domain (NCBI)
 down-regulates -0.12

MMP1015

MMP0097

Transcriptional regulator protein, Helix-turn-helix motif (NCBI)

MMP1052

conserved hypothetical archaeal protein (NCBI)
 down-regulates -0.12

MMP0097

MMP1052

GO Enrichment

Category: CC
Category GO ID GO Term Annotated Expected Significant p-value
CC GO:0032991 macromolecular complex 41 1.36 6 0.0001
CC GO:0005737 cytoplasm 67 2.22 6 0.0022
CC GO:0044424 intracellular part 71 2.35 6 0.0032
CC GO:0005622 intracellular 76 2.52 6 0.0049
CC GO:0005623 cell 85 2.82 6 0.0097
CC GO:0044464 cell part 85 2.82 6 0.0097
CC GO:0044391 ribosomal subunit 9 0.30 2 0.0298
CC GO:0044422 organelle part 9 0.30 2 0.0298
CC GO:0044446 intracellular organelle part 9 0.30 2 0.0298

Comments

Log in to post comments