Cre09.g409100.t1.2 uroporphyrinogen-III synthase family protein

Summary

Chromosome Product Feature Type Transcript Start End Strand Length
Cre09.g409100.t1.2 chromosome_9 uroporphyrinogen-III synthase family protein CDS 6742185 6746552 + 4 367

Phytozome

Locus Genomic View Functional Annotation
Cre09.g409100.t1.2 Cre09.g409100.t1.2

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Product Synonyms

Symbol Augustus Synonyms STRING PAC Record in ChlamyCyc
UPS1, UROS g10139.t1, Cre09.g409100.t1.1 JGI195943 30781293 Search

Gene Expression

FPKM

Genome Browser

Regulatory Modules

Motif 1 Motif 2 Residual
bicluster_0125
motif_0125_1

motif_0125_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.012
Motif Bicluster: 
bicluster_0125
Width: 
15
Number of Sites: 
1
Consensus: 
TaAAGgAGgnCAAGg
motif_0125_2

motif_0125_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
380
Motif Bicluster: 
bicluster_0125
Width: 
23
Number of Sites: 
1
Consensus: 
GCCAaTatatgAtActcAanATC
 0.16
bicluster_0191
motif_0191_1

motif_0191_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.00000014
Motif Bicluster: 
bicluster_0191
Width: 
20
Number of Sites: 
1
Consensus: 
CCaCCtCCaCCgCCgCCacC
motif_0191_2

motif_0191_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
2.9
Motif Bicluster: 
bicluster_0191
Width: 
19
Number of Sites: 
1
Consensus: 
CAcaCACGCaCAcgCAcAc
 0.19

GO Terms

GO:0004852 GO:0033014 -

uroporphyrinogen-III synthase activity

GO Category: 
molecular_function
Details: 
Catalysis of the reaction: hydroxymethylbilane = H(2)O + uroporphyrinogen III.

tetrapyrrole biosynthetic process

GO Category: 
biological_process
Details: 
The chemical reactions and pathways leading to the formation of tetrapyrroles, natural pigments containing four pyrrole rings joined by one-carbon units linking position 2 of one pyrrole ring to position 5 of the next.

Regulated by

Displaying 1 - 2 of 2
Regulator Locus Interaction Weight Other Influences

Regulates

String Network

Link to STRING STRING Network
JGI195943

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