Cre03.g172950.t1.2 homologue of NAP57

Summary

Chromosome Product Feature Type Transcript Start End Strand Length
Cre03.g172950.t1.2 chromosome_3 homologue of NAP57 CDS 4097570 4101007 - 3 437

Phytozome

Locus Genomic View Functional Annotation
Cre03.g172950.t1.2 Cre03.g172950.t1.2

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Product Synonyms

Symbol Augustus Synonyms STRING PAC Record in ChlamyCyc
CBF5 g3566.t1, Cre03.g172950.t1.1 JGI99415 30787716 Search

Gene Expression

FPKM

Genome Browser

Regulatory Modules

Motif 1 Motif 2 Residual
bicluster_0126
motif_0126_1

motif_0126_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.001
Motif Bicluster: 
bicluster_0126
Width: 
21
Number of Sites: 
1
Consensus: 
CGcTgCcGccgcTGCtgCTGc
motif_0126_2

motif_0126_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
11000
Motif Bicluster: 
bicluster_0126
Width: 
24
Number of Sites: 
1
Consensus: 
TTgTgCTcAAatCATttggaTATT
 0.10
bicluster_0157
motif_0157_1

motif_0157_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.72
Motif Bicluster: 
bicluster_0157
Width: 
24
Number of Sites: 
1
Consensus: 
TagTTCCntTtgCtTTttGttttt
motif_0157_2

motif_0157_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
20
Motif Bicluster: 
bicluster_0157
Width: 
24
Number of Sites: 
1
Consensus: 
CAgCgGcAGCAcCAGCagCAGCAG
 0.10

GO Terms

GO:0003723 GO:0006396 -

RNA binding

GO Category: 
molecular_function
Details: 
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.

RNA processing

GO Category: 
biological_process
Details: 
Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.

Regulated by

Displaying 1 - 2 of 2
Regulator Locus Interaction Weight Other Influences

Regulates

String Network

Link to STRING STRING Network
JGI99415

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