Cre07.g344550.t1.2 D-3-phosphoglycerate dehydrogenase

Summary

Chromosome Product Feature Type Transcript Start End Strand Length
Cre07.g344550.t1.2 chromosome_7 D-3-phosphoglycerate dehydrogenase CDS 4659517 4663832 - 4 315

Phytozome

Locus Genomic View Functional Annotation
Cre07.g344550.t1.2 Cre07.g344550.t1.2

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Product Synonyms

Symbol Augustus Synonyms STRING PAC Record in ChlamyCyc
g8017.t1, Cre07.g344550.t1.1 JGI136279 30774422 Search

Gene Expression

FPKM

Genome Browser

Regulatory Modules

Motif 1 Motif 2 Residual
bicluster_0179
motif_0179_1

motif_0179_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.00083
Motif Bicluster: 
bicluster_0179
Width: 
11
Number of Sites: 
1
Consensus: 
AGCaGCAGCAg
motif_0179_2

motif_0179_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.67
Motif Bicluster: 
bicluster_0179
Width: 
21
Number of Sites: 
1
Consensus: 
CgCCaCCAGCgCCGnCagCag
 0.15
bicluster_0199
motif_0199_1

motif_0199_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.000031
Motif Bicluster: 
bicluster_0199
Width: 
21
Number of Sites: 
1
Consensus: 
GgCGatGGcGGcGGCgGcaGC
motif_0199_2

motif_0199_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.04
Motif Bicluster: 
bicluster_0199
Width: 
15
Number of Sites: 
1
Consensus: 
cGCagcTGCTgnTGC
 0.19

GO Terms

GO:0016616 GO:0051287 GO:0008152 GO:0055114 GO:0048037 -

oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

GO Category: 
molecular_function
Details: 
Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group acts as a hydrogen or electron donor and reduces NAD+ or NADP.

NAD binding

GO Category: 
molecular_function
Details: 
Interacting selectively and non-covalently with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD+, or the reduced form, NADH.

metabolic process

GO Category: 
biological_process
Details: 
The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.

oxidation-reduction process

GO Category: 
biological_process
Details: 
A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

cofactor binding

GO Category: 
molecular_function
Details: 
Interacting selectively and non-covalently with a cofactor, a substance that is required for the activity of an enzyme or other protein. Cofactors may be inorganic, such as the metal atoms zinc, iron, and copper in certain forms, or organic, in which case they are referred to as coenzymes. Cofactors may either be bound tightly to active sites or bind loosely with the substrate.

Regulated by

Displaying 1 - 2 of 2
Regulator Locus Interaction Weight Other Influences

Regulates

String Network

Link to STRING STRING Network
JGI136279

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