Cre05.g240850.t1.2 thiaminC

Summary

Chromosome Product Feature Type Transcript Start End Strand Length
Cre05.g240850.t1.2 chromosome_5 thiaminC CDS 3364142 3372831 + 8 689

Phytozome

Locus Genomic View Functional Annotation
Cre05.g240850.t1.2 Cre05.g240850.t1.2

Help

Product Synonyms

Symbol Augustus Synonyms STRING PAC Record in ChlamyCyc
THI8 g5554.t1, Cre05.g240850.t1.1 JGI192720 30783367 Search

Gene Expression

FPKM

Genome Browser

Regulatory Modules

Motif 1 Motif 2 Residual
bicluster_0023
motif_0023_1

motif_0023_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.00000000034
Motif Bicluster: 
bicluster_0023
Width: 
21
Number of Sites: 
1
Consensus: 
gAGCTgcgGaAGgAGCAGcAG
motif_0023_2

motif_0023_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.000021
Motif Bicluster: 
bicluster_0023
Width: 
24
Number of Sites: 
1
Consensus: 
TaTcTTaAtgtcTccaGAnantAA
 0.10
bicluster_0159
motif_0159_1

motif_0159_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.000017
Motif Bicluster: 
bicluster_0159
Width: 
15
Number of Sites: 
1
Consensus: 
aagtAtaaTAaAAtA
motif_0159_2

motif_0159_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
1
Motif Bicluster: 
bicluster_0159
Width: 
24
Number of Sites: 
1
Consensus: 
GgCAgCgGCAGgagCAGCaGCAgC
 0.24

GO Terms

GO:0051536 GO:0009228 -

iron-sulfur cluster binding

GO Category: 
molecular_function
Details: 
Interacting selectively and non-covalently with an iron-sulfur cluster, a combination of iron and sulfur atoms.

thiamine biosynthetic process

GO Category: 
biological_process
Details: 
The chemical reactions and pathways resulting in the formation of thiamine (vitamin B1), a water soluble vitamin present in fresh vegetables and meats, especially liver.

Regulated by

Displaying 1 - 2 of 2
Regulator Locus Interaction Weight Other Influences

Regulates

String Network

Link to STRING STRING Network
JGI192720

Add comment

Log in to post comments