Cre12.g522350.t1.2 Nucleotidylyl transferase superfamily protein

Summary

Chromosome Product Feature Type Transcript Start End Strand Length
Cre12.g522350.t1.2 chromosome_12 Nucleotidylyl transferase superfamily protein CDS 4561313 4565885 + 4 572

Phytozome

Locus Genomic View Functional Annotation
Cre12.g522350.t1.2 Cre12.g522350.t1.2

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Product Synonyms

Symbol Augustus Synonyms STRING PAC Record in ChlamyCyc
TSW1 g12864.t1, Cre12.g522350.t1.1 JGI380258 30792277 Search

Gene Expression

FPKM

Genome Browser

Regulatory Modules

Motif 1 Motif 2 Residual
bicluster_0007
motif_0007_1

motif_0007_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.000000000004
Motif Bicluster: 
bicluster_0007
Width: 
21
Number of Sites: 
1
Consensus: 
GCCgCTGCcGCcgCTgCcGCt
motif_0007_2

motif_0007_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.035
Motif Bicluster: 
bicluster_0007
Width: 
21
Number of Sites: 
1
Consensus: 
AATTgnaCTaTnttGTgcnaA
 0.08
bicluster_0135
motif_0135_1

motif_0135_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
140
Motif Bicluster: 
bicluster_0135
Width: 
21
Number of Sites: 
1
Consensus: 
AaACaagAAAtGggCAAgaCa
motif_0135_2

motif_0135_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
390
Motif Bicluster: 
bicluster_0135
Width: 
11
Number of Sites: 
1
Consensus: 
AAtaTGCAGaC
 0.09

GO Terms

GO:0000166 GO:0004812 GO:0005524 GO:0006418 -

nucleotide binding

GO Category: 
molecular_function
Details: 
Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.

aminoacyl-tRNA ligase activity

GO Category: 
molecular_function
Details: 
Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP.

ATP binding

GO Category: 
molecular_function
Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.

tRNA aminoacylation for protein translation

GO Category: 
biological_process
Details: 
The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, to be used in ribosome-mediated polypeptide synthesis.

Regulated by

Displaying 1 - 2 of 2
Regulator Locus Interaction Weight Other Influences

Regulates

String Network

Link to STRING STRING Network
JGI380258

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