Cre02.g079600.t1.2 phenylalanyl-tRNA synthetase class IIc family protein

Summary

Chromosome Product Feature Type Transcript Start End Strand Length
Cre02.g079600.t1.2 chromosome_2 phenylalanyl-tRNA synthetase class IIc family protein CDS 919601 922753 + 3 152

Phytozome

Locus Genomic View Functional Annotation
Cre02.g079600.t1.2 Cre02.g079600.t1.2

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Product Synonyms

Symbol Augustus Synonyms STRING PAC Record in ChlamyCyc
TSF2 g1454.t1, Cre02.g079600.t1.1 JGI290369 30785296 Search

Gene Expression

FPKM

Genome Browser

Regulatory Modules

Motif 1 Motif 2 Residual
bicluster_0125
motif_0125_1

motif_0125_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.012
Motif Bicluster: 
bicluster_0125
Width: 
15
Number of Sites: 
1
Consensus: 
TaAAGgAGgnCAAGg
motif_0125_2

motif_0125_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
380
Motif Bicluster: 
bicluster_0125
Width: 
23
Number of Sites: 
1
Consensus: 
GCCAaTatatgAtActcAanATC
 0.16
bicluster_0163
motif_0163_1

motif_0163_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
6.6
Motif Bicluster: 
bicluster_0163
Width: 
20
Number of Sites: 
1
Consensus: 
TtTnccATCCATtcnTgCAA
motif_0163_2

motif_0163_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
590
Motif Bicluster: 
bicluster_0163
Width: 
23
Number of Sites: 
1
Consensus: 
CcGCCGCCAcCgCCGtCGCCAcC
 0.17

GO Terms

GO:0000049 GO:0004812 GO:0005524 GO:0043039 GO:0005737 GO:0000287 GO:0004826 GO:0006432 GO:0008033 -

tRNA binding

GO Category: 
molecular_function
Details: 
Interacting selectively and non-covalently with transfer RNA.

aminoacyl-tRNA ligase activity

GO Category: 
molecular_function
Details: 
Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP.

ATP binding

GO Category: 
molecular_function
Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.

tRNA aminoacylation

GO Category: 
biological_process
Details: 
The chemical reactions and pathways by which the various amino acids become bonded to their corresponding tRNAs. The most common route for synthesis of aminoacyl tRNA is by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, usually catalyzed by the cognate aminoacyl-tRNA ligase. A given aminoacyl-tRNA ligase aminoacylates all species of an isoaccepting group of tRNA molecules.

cytoplasm

GO Category: 
cellular_component
Details: 
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

magnesium ion binding

GO Category: 
molecular_function
Details: 
Interacting selectively and non-covalently with magnesium (Mg) ions.

phenylalanine-tRNA ligase activity

GO Category: 
molecular_function
Details: 
Catalysis of the reaction: ATP + L-phenylalanine + tRNA(Phe) = AMP + diphosphate + L-phenylalanyl-tRNA(Phe).

phenylalanyl-tRNA aminoacylation

GO Category: 
biological_process
Details: 
The process of coupling phenylalanine to phenylalanyl-tRNA, catalyzed by phenylalanyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA.

tRNA processing

GO Category: 
biological_process
Details: 
The process in which a pre-tRNA molecule is converted to a mature tRNA, ready for addition of an aminoacyl group.

Regulated by

Displaying 1 - 2 of 2
Regulator Locus Interaction Weight Other Influences

Regulates

String Network

Link to STRING STRING Network
JGI290369

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