Cre03.g160500.t1.2 lysyl-tRNA synthetase 1

Summary

Chromosome Product Feature Type Transcript Start End Strand Length
Cre03.g160500.t1.2 chromosome_3 lysyl-tRNA synthetase 1 CDS 2579138 2586091 + 6 953

Phytozome

Locus Genomic View Functional Annotation
Cre03.g160500.t1.2 Cre03.g160500.t1.2

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Product Synonyms

Symbol Augustus Synonyms STRING PAC Record in ChlamyCyc
TSK1 g3288.t1, Cre03.g160500.t1.1 JGI138493 30788286 Search

Gene Expression

FPKM

Genome Browser

Regulatory Modules

Motif 1 Motif 2 Residual
bicluster_0109
motif_0109_1

motif_0109_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
3800
Motif Bicluster: 
bicluster_0109
Width: 
15
Number of Sites: 
1
Consensus: 
CntTcAcTTgcantT
motif_0109_2

motif_0109_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
3900
Motif Bicluster: 
bicluster_0109
Width: 
15
Number of Sites: 
1
Consensus: 
CCagtCCcAtCaCAC
 0.15
bicluster_0127
motif_0127_1

motif_0127_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
8
Motif Bicluster: 
bicluster_0127
Width: 
24
Number of Sites: 
1
Consensus: 
CcAcCAgcgccGCCATCagcngcc
motif_0127_2

motif_0127_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
18
Motif Bicluster: 
bicluster_0127
Width: 
24
Number of Sites: 
1
Consensus: 
TTACatTcaTGatTAgcTaAGGaA
 0.16

GO Terms

GO:0000166 GO:0004812 GO:0005524 GO:0006418 GO:0003676 -

nucleotide binding

GO Category: 
molecular_function
Details: 
Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.

aminoacyl-tRNA ligase activity

GO Category: 
molecular_function
Details: 
Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP.

ATP binding

GO Category: 
molecular_function
Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.

tRNA aminoacylation for protein translation

GO Category: 
biological_process
Details: 
The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, to be used in ribosome-mediated polypeptide synthesis.

nucleic acid binding

GO Category: 
molecular_function
Details: 
Interacting selectively and non-covalently with any nucleic acid.

Regulated by

Displaying 1 - 2 of 2
Regulator Locus Interaction Weight Other Influences

Regulates

String Network

Link to STRING STRING Network
JGI138493

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