Cre11.g467700.t1.1 Uroporphyrinogen decarboxylase

Summary

Chromosome Product Feature Type Transcript Start End Strand Length
Cre11.g467700.t1.1 chromosome_11 Uroporphyrinogen decarboxylase CDS 1826115 1831677 - 5 562

Phytozome

Locus Genomic View Functional Annotation
Cre11.g467700.t1.1 Cre11.g467700.t1.1

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Product Synonyms

Symbol Augustus Synonyms STRING PAC Record in ChlamyCyc
HEME, UPD1 g11734.t1 JGI132194 30776050 Search

Gene Expression

FPKM

Genome Browser

Regulatory Modules

Motif 1 Motif 2 Residual
bicluster_0028
motif_0028_1

motif_0028_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.00000028
Motif Bicluster: 
bicluster_0028
Width: 
24
Number of Sites: 
1
Consensus: 
ATAccagcCCAAaCtAAAcCgAAc
motif_0028_2

motif_0028_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.0000000000000067
Motif Bicluster: 
bicluster_0028
Width: 
24
Number of Sites: 
1
Consensus: 
cCAncagCACCagCAgcAgCagCA
 0.12
bicluster_0170
motif_0170_1

motif_0170_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
14
Motif Bicluster: 
bicluster_0170
Width: 
15
Number of Sites: 
1
Consensus: 
ACAcACaTGCAcACA
motif_0170_2

motif_0170_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
83
Motif Bicluster: 
bicluster_0170
Width: 
23
Number of Sites: 
1
Consensus: 
GCTgCcgnTGCtAcTGCngaTGC
 0.15

GO Terms

GO:0004853 GO:0006779 -

uroporphyrinogen decarboxylase activity

GO Category: 
molecular_function
Details: 
Catalysis of the reaction: uroporphyrinogen-III = coproporphyrinogen + 4 CO2.

porphyrin-containing compound biosynthetic process

GO Category: 
biological_process
Details: 
The chemical reactions and pathways resulting in the formation of any member of a large group of derivatives or analogs of porphyrin. Porphyrin consists of a ring of four pyrrole nuclei linked each to the next at their alpha positions through a methine group.

Regulated by

Displaying 1 - 2 of 2
Regulator Locus Interaction Weight Other Influences

Regulates

String Network

Link to STRING STRING Network
JGI132194

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