Cre05.g239250.t1.2 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein

Summary

Chromosome Product Feature Type Transcript Start End Strand Length
Cre05.g239250.t1.2 chromosome_5 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein CDS 3128116 3138417 + 10 301

Phytozome

Locus Genomic View Functional Annotation
Cre05.g239250.t1.2 Cre05.g239250.t1.2

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Product Synonyms

Symbol Augustus Synonyms STRING PAC Record in ChlamyCyc
g5519.t1, Cre05.g239250.t1.1 Not available 30783292 Search

Gene Expression

FPKM

Genome Browser

Regulatory Modules

Motif 1 Motif 2 Residual
bicluster_0027
motif_0027_1

motif_0027_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
730
Motif Bicluster: 
bicluster_0027
Width: 
24
Number of Sites: 
1
Consensus: 
AAantctAcaATAngcaaagGAAt
motif_0027_2

motif_0027_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
740
Motif Bicluster: 
bicluster_0027
Width: 
15
Number of Sites: 
1
Consensus: 
AcAtcttTTgCAAtt
 0.02
bicluster_0122
motif_0122_1

motif_0122_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.000000000013
Motif Bicluster: 
bicluster_0122
Width: 
21
Number of Sites: 
1
Consensus: 
CTGCtGCggCTGCtgCTGCTG
motif_0122_2

motif_0122_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
Motif Bicluster: 
bicluster_0122
Width: 
0
Number of Sites: 
1
 0.15

GO Terms

GO:0005634 -

nucleus

GO Category: 
cellular_component
Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

Regulated by

Displaying 1 - 2 of 2
Regulator Locus Interaction Weight Other Influences

Regulates

String Network

Link to STRING STRING Network

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