Cre12.g557000.t1.2 Ubiquitin-like superfamily protein

Summary

Chromosome Product Feature Type Transcript Start End Strand Length
Cre12.g557000.t1.2 chromosome_12 Ubiquitin-like superfamily protein CDS 7360998 7362879 + 1 881

Phytozome

Locus Genomic View Functional Annotation
Cre12.g557000.t1.2 Cre12.g557000.t1.2

Help

Product Synonyms

Symbol Augustus Synonyms STRING PAC Record in ChlamyCyc
APG12 g13388.t1, Cre12.g557000.t1.1 JGI194981 30793338 Search

Gene Expression

FPKM

Genome Browser

Regulatory Modules

Motif 1 Motif 2 Residual
bicluster_0025
motif_0025_1

motif_0025_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.0000000000013
Motif Bicluster: 
bicluster_0025
Width: 
24
Number of Sites: 
1
Consensus: 
tAgcnaCAgcAgCAacagcAgcAa
motif_0025_2

motif_0025_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
5.9e-21
Motif Bicluster: 
bicluster_0025
Width: 
21
Number of Sites: 
1
Consensus: 
GGCGGcGGtGGCaGCGGCnGC
 0.28
bicluster_0143
motif_0143_1

motif_0143_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.000016
Motif Bicluster: 
bicluster_0143
Width: 
21
Number of Sites: 
1
Consensus: 
attattngtgtaTTgtTgttT
motif_0143_2

motif_0143_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.0000000046
Motif Bicluster: 
bicluster_0143
Width: 
24
Number of Sites: 
1
Consensus: 
GcGgCGGCgGCaGcGGcggCgGCG
 0.23

GO Terms

GO:0000045 GO:0005737 -

autophagic vacuole assembly

GO Category: 
biological_process
Details: 
The formation of a double membrane-bounded structure, the autophagosome, that occurs when a specialized membrane sac, called the isolation membrane, starts to enclose a portion of the cytoplasm.

cytoplasm

GO Category: 
cellular_component
Details: 
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

Regulated by

Displaying 1 - 2 of 2
Regulator Locus Interaction Weight Other Influences

Regulates

String Network

Link to STRING STRING Network
JGI194981

Add comment

Log in to post comments