Cre12.g520600.t1.2 Translation elongation factor EF1B/ribosomal protein S6 family protein

Summary

Chromosome Product Feature Type Transcript Start End Strand Length
Cre12.g520600.t1.2 chromosome_12 Translation elongation factor EF1B/ribosomal protein S6 family protein CDS 4393059 4394588 - 1 529

Phytozome

Locus Genomic View Functional Annotation
Cre12.g520600.t1.2 Cre12.g520600.t1.2

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Product Synonyms

Symbol Augustus Synonyms STRING PAC Record in ChlamyCyc
g12827.t1, Cre12.g520600.t1.1 JGI195632 30792817 Search

Gene Expression

FPKM

Genome Browser

Regulatory Modules

Motif 1 Motif 2 Residual
bicluster_0181
motif_0181_1

motif_0181_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
96000
Motif Bicluster: 
bicluster_0181
Width: 
14
Number of Sites: 
1
Consensus: 
TatncAAtAGtTTG
motif_0181_2

motif_0181_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
7500
Motif Bicluster: 
bicluster_0181
Width: 
15
Number of Sites: 
1
Consensus: 
CAGcAGCAgcGAGcn
 0.13
bicluster_0202
motif_0202_1

motif_0202_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:17
e.value: 
330
Motif Bicluster: 
bicluster_0202
Width: 
20
Number of Sites: 
1
Consensus: 
ATGGTAAAcatnTtaGTATT
motif_0202_2

motif_0202_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:17
e.value: 
500
Motif Bicluster: 
bicluster_0202
Width: 
15
Number of Sites: 
1
Consensus: 
ATGAtGTaGTTgctG
 0.05

GO Terms

GO:0003735 GO:0019843 GO:0006412 GO:0005840 -

structural constituent of ribosome

GO Category: 
molecular_function
Details: 
The action of a molecule that contributes to the structural integrity of the ribosome.

rRNA binding

GO Category: 
molecular_function
Details: 
Interacting selectively and non-covalently with ribosomal RNA.

translation

GO Category: 
biological_process
Details: 
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.

ribosome

GO Category: 
cellular_component
Details: 
An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.

Regulated by

Displaying 1 - 2 of 2
Regulator Locus Interaction Weight Other Influences

Regulates

String Network

Link to STRING STRING Network
JGI195632

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