Cre12.g549700.t1.2 RNA-binding KH domain-containing protein

Summary

Chromosome Product Feature Type Transcript Start End Strand Length
Cre12.g549700.t1.2 chromosome_12 RNA-binding KH domain-containing protein CDS 8320186 8323867 + 3 681

Phytozome

Locus Genomic View Functional Annotation
Cre12.g549700.t1.2 Cre12.g549700.t1.2

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Product Synonyms

Symbol Augustus Synonyms STRING PAC Record in ChlamyCyc
g13554.t1, Cre12.g549700.t1.1 JGI148035 30791977 Search

Gene Expression

FPKM

Genome Browser

Regulatory Modules

Motif 1 Motif 2 Residual
bicluster_0131
motif_0131_1

motif_0131_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
3600
Motif Bicluster: 
bicluster_0131
Width: 
15
Number of Sites: 
1
Consensus: 
taTtTAtATtACaAt
motif_0131_2

motif_0131_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
1100
Motif Bicluster: 
bicluster_0131
Width: 
15
Number of Sites: 
1
Consensus: 
ACATTgcAaTgCtTA
 0.12
bicluster_0180
motif_0180_1

motif_0180_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
110
Motif Bicluster: 
bicluster_0180
Width: 
24
Number of Sites: 
1
Consensus: 
GcTncTGGtgnTGCcgGTgcnGnt
motif_0180_2

motif_0180_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
1900
Motif Bicluster: 
bicluster_0180
Width: 
21
Number of Sites: 
1
Consensus: 
TGcATtgagAcaCgCAcACAC
 0.18

GO Terms

GO:0003723 -

RNA binding

GO Category: 
molecular_function
Details: 
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.

Regulated by

Displaying 1 - 2 of 2
Regulator Locus Interaction Weight Other Influences

Regulates

String Network

Link to STRING STRING Network
JGI148035

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