Cre13.g570550.t1.2 cytidine deaminase 1

Summary

Chromosome Product Feature Type Transcript Start End Strand Length
Cre13.g570550.t1.2 chromosome_13 cytidine deaminase 1 CDS 1250653 1254076 - 3 423

Phytozome

Locus Genomic View Functional Annotation
Cre13.g570550.t1.2 Cre13.g570550.t1.2

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Product Synonyms

Symbol Augustus Synonyms STRING PAC Record in ChlamyCyc
g14034.t1, Cre13.g570550.t1.1 JGI127415 30784576 Search

Gene Expression

FPKM

Genome Browser

Regulatory Modules

Motif 1 Motif 2 Residual
bicluster_0008
motif_0008_1

motif_0008_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.0000042
Motif Bicluster: 
bicluster_0008
Width: 
15
Number of Sites: 
1
Consensus: 
CACatGCAaACAngC
motif_0008_2

motif_0008_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.0000021
Motif Bicluster: 
bicluster_0008
Width: 
21
Number of Sites: 
1
Consensus: 
gctGccgcTGCTaCtGCCgCn
 0.13
bicluster_0014
motif_0014_1

motif_0014_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.000000000029
Motif Bicluster: 
bicluster_0014
Width: 
15
Number of Sites: 
1
Consensus: 
CAGCgcCAGCggCaG
motif_0014_2

motif_0014_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
Motif Bicluster: 
bicluster_0014
Width: 
0
Number of Sites: 
1
 0.23

GO Terms

GO:0008270 GO:0016787 GO:0004126 GO:0009972 -

zinc ion binding

GO Category: 
molecular_function
Details: 
Interacting selectively and non-covalently with zinc (Zn) ions.

hydrolase activity

GO Category: 
molecular_function
Details: 
Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.

cytidine deaminase activity

GO Category: 
molecular_function
Details: 
Catalysis of the reaction: cytidine + H2O = uridine + NH3.

cytidine deamination

GO Category: 
biological_process
Details: 
The removal of amino group in the presence of water.

Regulated by

Displaying 1 - 2 of 2
Regulator Locus Interaction Weight Other Influences

Regulates

String Network

Link to STRING STRING Network
JGI127415

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