Cre09.g387726.t1.1 aspartate aminotransferase 3

Summary

Chromosome Product Feature Type Transcript Start End Strand Length
Cre09.g387726.t1.1 chromosome_9 aspartate aminotransferase 3 CDS 3236845 3241559 - 4 714

Phytozome

Locus Genomic View Functional Annotation
Cre09.g387726.t1.1 Cre09.g387726.t1.1

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Product Synonyms

Symbol Augustus Synonyms STRING PAC Record in ChlamyCyc
AST1 g9594.t1, Cre02.g122250.t1.1, Cre02.g122250.t1.2 Not available 30780321 Search

Gene Expression

FPKM

Genome Browser

Regulatory Modules

Motif 1 Motif 2 Residual
bicluster_0005
motif_0005_1

motif_0005_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
3.9e-20
Motif Bicluster: 
bicluster_0005
Width: 
21
Number of Sites: 
1
Consensus: 
cCgcCaCCacCgCCacCnCCn
motif_0005_2

motif_0005_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.0057
Motif Bicluster: 
bicluster_0005
Width: 
11
Number of Sites: 
1
Consensus: 
ACAaACAcAcA
 0.49
bicluster_0188
motif_0188_1

motif_0188_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.00000041
Motif Bicluster: 
bicluster_0188
Width: 
24
Number of Sites: 
1
Consensus: 
CCgcCaCCGCCagCnCcgcCnCca
motif_0188_2

motif_0188_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.000000000039
Motif Bicluster: 
bicluster_0188
Width: 
15
Number of Sites: 
1
Consensus: 
CgGCAGCAGCAGCAG
 0.25

GO Terms

GO:0030170 GO:0009058 -

pyridoxal phosphate binding

GO Category: 
molecular_function
Details: 
Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6.

biosynthetic process

GO Category: 
biological_process
Details: 
The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.

Regulated by

Displaying 1 - 2 of 2
Regulator Locus Interaction Weight Other Influences

Regulates

String Network

Link to STRING STRING Network

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