Cre09.g387060.t1.1 organic cation/carnitine transporter1

Summary

Chromosome Product Feature Type Transcript Start End Strand Length
Cre09.g387060.t1.1 chromosome_9 organic cation/carnitine transporter1 CDS 3150592 3155429 + 4 837

Phytozome

Locus Genomic View Functional Annotation
Cre09.g387060.t1.1 Cre09.g387060.t1.1

Help

Product Synonyms

Symbol Augustus Synonyms STRING PAC Record in ChlamyCyc
g9576.t1, Cre02.g121400.t1.1 Not available 30781504 Search

Gene Expression

FPKM

Genome Browser

Regulatory Modules

Motif 1 Motif 2 Residual
bicluster_0188
motif_0188_1

motif_0188_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.00000041
Motif Bicluster: 
bicluster_0188
Width: 
24
Number of Sites: 
1
Consensus: 
CCgcCaCCGCCagCnCcgcCnCca
motif_0188_2

motif_0188_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.000000000039
Motif Bicluster: 
bicluster_0188
Width: 
15
Number of Sites: 
1
Consensus: 
CgGCAGCAGCAGCAG
 0.25
bicluster_0213
motif_0213_1

motif_0213_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:17
e.value: 
55000
Motif Bicluster: 
bicluster_0213
Width: 
11
Number of Sites: 
1
Consensus: 
CtCAtatgTTa
motif_0213_2

motif_0213_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:17
e.value: 
230
Motif Bicluster: 
bicluster_0213
Width: 
24
Number of Sites: 
1
Consensus: 
GcAGCaGcgGggGCgGgAGtGGcg
 0.20

GO Terms

GO:0022857 GO:0055085 GO:0016021 -

transmembrane transporter activity

GO Category: 
molecular_function
Details: 
Enables the transfer of a substance from one side of a membrane to the other.

transmembrane transport

GO Category: 
biological_process
Details: 
The process in which a solute is transported from one side of a membrane to the other.

integral to membrane

GO Category: 
cellular_component
Details: 
Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane.

Regulated by

Displaying 1 - 2 of 2
Regulator Locus Interaction Weight Other Influences

Regulates

String Network

Link to STRING STRING Network

Add comment

Log in to post comments