Cre12.g486900.t1.2 FMN-linked oxidoreductases superfamily protein

Summary

Chromosome Product Feature Type Transcript Start End Strand Length
Cre12.g486900.t1.2 chromosome_12 FMN-linked oxidoreductases superfamily protein CDS 1547381 1552200 + 4 819

Phytozome

Locus Genomic View Functional Annotation
Cre12.g486900.t1.2 Cre12.g486900.t1.2

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Product Synonyms

Symbol Augustus Synonyms STRING PAC Record in ChlamyCyc
g12252.t1, Cre12.g486900.t1.1 JGI114939 30792022 Search

Gene Expression

FPKM

Genome Browser

Regulatory Modules

Motif 1 Motif 2 Residual
bicluster_0046
motif_0046_1

motif_0046_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.00000000000039
Motif Bicluster: 
bicluster_0046
Width: 
21
Number of Sites: 
1
Consensus: 
CAgCAGcGgCtGCAGCAGCnG
motif_0046_2

motif_0046_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.088
Motif Bicluster: 
bicluster_0046
Width: 
21
Number of Sites: 
1
Consensus: 
tGGTggtGGcGGcGGcgGcGG
 0.22
bicluster_0137
motif_0137_1

motif_0137_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.000019
Motif Bicluster: 
bicluster_0137
Width: 
21
Number of Sites: 
1
Consensus: 
AGcagcAGcaaCAGcngnggc
motif_0137_2

motif_0137_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
Motif Bicluster: 
bicluster_0137
Width: 
0
Number of Sites: 
1
 0.28

GO Terms

GO:0017150 GO:0050660 GO:0008033 GO:0055114 -

tRNA dihydrouridine synthase activity

GO Category: 
molecular_function
Details: 
Catalysis of the reaction: tRNA-uracil + acceptor = tRNA-dihydrouridine + reduced acceptor.

flavin adenine dinucleotide binding

GO Category: 
molecular_function
Details: 
Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2.

tRNA processing

GO Category: 
biological_process
Details: 
The process in which a pre-tRNA molecule is converted to a mature tRNA, ready for addition of an aminoacyl group.

oxidation-reduction process

GO Category: 
biological_process
Details: 
A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

Regulated by

Displaying 1 - 2 of 2
Regulator Locus Interaction Weight Other Influences

Regulates

String Network

Link to STRING STRING Network
JGI114939

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