Cre06.g278142.t1.1 Methylthiotransferase

Summary

Chromosome Product Feature Type Transcript Start End Strand Length
Cre06.g278142.t1.1 chromosome_6 Methylthiotransferase CDS 3691837 3697942 - 6 105

Phytozome

Locus Genomic View Functional Annotation
Cre06.g278142.t1.1 Cre06.g278142.t1.1

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Product Synonyms

Symbol Augustus Synonyms STRING PAC Record in ChlamyCyc
g6287.t1, Cre13.g595600.t1.1, Cre13.g595600.t1.2 Not available 30779262 Search

Gene Expression

FPKM

Genome Browser

Regulatory Modules

Motif 1 Motif 2 Residual
bicluster_0137
motif_0137_1

motif_0137_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.000019
Motif Bicluster: 
bicluster_0137
Width: 
21
Number of Sites: 
1
Consensus: 
AGcagcAGcaaCAGcngnggc
motif_0137_2

motif_0137_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
Motif Bicluster: 
bicluster_0137
Width: 
0
Number of Sites: 
1
 0.28
bicluster_0204
motif_0204_1

motif_0204_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:17
e.value: 
0.000000031
Motif Bicluster: 
bicluster_0204
Width: 
24
Number of Sites: 
1
Consensus: 
CnGCCgCtGctnCtGCctCtGCcg
motif_0204_2

motif_0204_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:17
e.value: 
21
Motif Bicluster: 
bicluster_0204
Width: 
21
Number of Sites: 
1
Consensus: 
AaTAaaaTgTaTTcaaAaAnT
 0.23

GO Terms

GO:0003824 GO:0051539 GO:0009451 GO:0051536 -

catalytic activity

GO Category: 
molecular_function
Details: 
Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.

4 iron, 4 sulfur cluster binding

GO Category: 
molecular_function
Details: 
Interacting selectively and non-covalently with a 4 iron, 4 sulfur (4Fe-4S) cluster; this cluster consists of four iron atoms, with the inorganic sulfur atoms found between the irons and acting as bridging ligands.

RNA modification

GO Category: 
biological_process
Details: 
The covalent alteration of one or more nucleotides within an RNA molecule to produce an RNA molecule with a sequence that differs from that coded genetically.

iron-sulfur cluster binding

GO Category: 
molecular_function
Details: 
Interacting selectively and non-covalently with an iron-sulfur cluster, a combination of iron and sulfur atoms.

Regulated by

Displaying 1 - 2 of 2
Regulator Locus Interaction Weight Other Influences

Regulates

String Network

Link to STRING STRING Network

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