Cre02.g082500.t1.1 photosystem I reaction center subunit PSI-N, chloroplast, putative / PSI-N, putative (PSAN)

Summary

Chromosome Product Feature Type Transcript Start End Strand Length
Cre02.g082500.t1.1 chromosome_2 photosystem I reaction center subunit PSI-N, chloroplast, putative / PSI-N, putative (PSAN) CDS 1241637 1244122 + 2 485

Phytozome

Locus Genomic View Functional Annotation
Cre02.g082500.t1.1 Cre02.g082500.t1.1

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Product Synonyms

Symbol Augustus Synonyms STRING PAC Record in ChlamyCyc
g1512.t1 JGI186531 30786029 Search

Gene Expression

FPKM

Genome Browser

Regulatory Modules

Motif 1 Motif 2 Residual
bicluster_0122
motif_0122_1

motif_0122_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.000000000013
Motif Bicluster: 
bicluster_0122
Width: 
21
Number of Sites: 
1
Consensus: 
CTGCtGCggCTGCtgCTGCTG
motif_0122_2

motif_0122_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
Motif Bicluster: 
bicluster_0122
Width: 
0
Number of Sites: 
1
 0.15
bicluster_0186
motif_0186_1

motif_0186_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.45
Motif Bicluster: 
bicluster_0186
Width: 
15
Number of Sites: 
1
Consensus: 
TCTGCCagTTTncTT
motif_0186_2

motif_0186_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
34
Motif Bicluster: 
bicluster_0186
Width: 
20
Number of Sites: 
1
Consensus: 
AAAACTAAAAcTACcTGCAT
 0.05

GO Terms

GO:0005516 GO:0015979 GO:0009522 GO:0042651 -

calmodulin binding

GO Category: 
molecular_function
Details: 
Interacting selectively and non-covalently with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states.

photosynthesis

GO Category: 
biological_process
Details: 
The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds.

photosystem I

GO Category: 
cellular_component
Details: 
A photosystem that contains an iron-sulfur reaction center associated with accessory pigments and electron carriers. In cyanobacteria and chloroplasts, photosystem I functions as a light-dependent plastocyanin-ferredoxin oxidoreductase, transferring electrons from plastocyanin to ferredoxin; in photosynthetic bacteria that have only a single type I photosystem, such as the green sulfur bacteria, electrons can go either to ferredoxin (Fd) -> NAD+ or to menaquinone (MK) -> Cytb/FeS -> Cytc555 -> photosystem I (cyclic photophosphorylation).

thylakoid membrane

GO Category: 
cellular_component
Details: 
The pigmented membrane of any thylakoid.

Regulated by

Displaying 1 - 2 of 2
Regulator Locus Interaction Weight Other Influences

Regulates

String Network

Link to STRING STRING Network
JGI186531

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