Cre02.g087950.t1.2 methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative

Summary

Chromosome Product Feature Type Transcript Start End Strand Length
Cre02.g087950.t1.2 chromosome_2 methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative CDS 1941058 1952323 - 11 265

Phytozome

Locus Genomic View Functional Annotation
Cre02.g087950.t1.2 Cre02.g087950.t1.2

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Product Synonyms

Symbol Augustus Synonyms STRING PAC Record in ChlamyCyc
TSM1 g1636.t1, Cre02.g087950.t1.1 JGI376980 30785739 Search

Gene Expression

FPKM

Genome Browser

Regulatory Modules

Motif 1 Motif 2 Residual
bicluster_0026
motif_0026_1

motif_0026_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
58
Motif Bicluster: 
bicluster_0026
Width: 
15
Number of Sites: 
1
Consensus: 
ATTaTaTnagTTAct
motif_0026_2

motif_0026_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.0000000000000035
Motif Bicluster: 
bicluster_0026
Width: 
24
Number of Sites: 
1
Consensus: 
GcGgcaGcgGCAGCaGcagCaGCa
 0.22
bicluster_0050
motif_0050_1

motif_0050_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.00000000019
Motif Bicluster: 
bicluster_0050
Width: 
21
Number of Sites: 
1
Consensus: 
taCAcAcACAngcgCACatna
motif_0050_2

motif_0050_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
8.9
Motif Bicluster: 
bicluster_0050
Width: 
24
Number of Sites: 
1
Consensus: 
tcgCcgCcnCCaCctCCgCcaCCg
 0.16

GO Terms

GO:0000049 GO:0000166 GO:0004812 GO:0005524 GO:0006418 -

tRNA binding

GO Category: 
molecular_function
Details: 
Interacting selectively and non-covalently with transfer RNA.

nucleotide binding

GO Category: 
molecular_function
Details: 
Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.

aminoacyl-tRNA ligase activity

GO Category: 
molecular_function
Details: 
Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP.

ATP binding

GO Category: 
molecular_function
Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.

tRNA aminoacylation for protein translation

GO Category: 
biological_process
Details: 
The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, to be used in ribosome-mediated polypeptide synthesis.

Regulated by

Displaying 1 - 2 of 2
Regulator Locus Interaction Weight Other Influences

Regulates

String Network

Link to STRING STRING Network
JGI376980

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