Cre04.g230536.t1.1

Summary

Chromosome Product Feature Type Transcript Start End Strand Length
Cre04.g230536.t1.1 chromosome_4 CDS 3884652 3897770 - 13 118

Phytozome

Locus Genomic View Functional Annotation
Cre04.g230536.t1.1 Cre04.g230536.t1.1

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Product Synonyms

Symbol Augustus Synonyms STRING PAC Record in ChlamyCyc
g5042.t1 Not available 30791106 Search

Gene Expression

FPKM

Genome Browser

Regulatory Modules

Motif 1 Motif 2 Residual
bicluster_0083
motif_0083_1

motif_0083_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.000011
Motif Bicluster: 
bicluster_0083
Width: 
24
Number of Sites: 
1
Consensus: 
CtcCgcCtCCAcCacCgCCtgCAG
motif_0083_2

motif_0083_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
2900
Motif Bicluster: 
bicluster_0083
Width: 
15
Number of Sites: 
1
Consensus: 
tttAAAatTcTaCaa
 0.18
bicluster_0194
motif_0194_1

motif_0194_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
4.2
Motif Bicluster: 
bicluster_0194
Width: 
24
Number of Sites: 
1
Consensus: 
CTGCtGgTGgTGCTGtTGCTGCTG
motif_0194_2

motif_0194_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
170
Motif Bicluster: 
bicluster_0194
Width: 
11
Number of Sites: 
1
Consensus: 
gaGCAACAAAA
 0.14

GO Terms

GO:0005044 GO:0016020 -

scavenger receptor activity

GO Category: 
molecular_function
Details: 
Combining with any modified low-density lipoprotein (LDL) or other polyanionic ligand and delivering the ligand into the cell via endocytosis. Ligands include acetylated and oxidized LDL, Gram-positive and Gram-negative bacteria, apoptotic cells, beta-amyloid fibrils, and advanced glycation end products (AGEs).

membrane

GO Category: 
cellular_component
Details: 
Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.

Regulated by

Displaying 1 - 2 of 2
Regulator Locus Interaction Weight Other Influences

Regulates

String Network

Link to STRING STRING Network

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