Cre08.g385500.t1.2 alpha-amylase-like 3

Summary

Chromosome Product Feature Type Transcript Start End Strand Length
Cre08.g385500.t1.2 chromosome_8 alpha-amylase-like 3 CDS 4947926 4953985 - 6 059

Phytozome

Locus Genomic View Functional Annotation
Cre08.g385500.t1.2 Cre08.g385500.t1.2

Help

Product Synonyms

Symbol Augustus Synonyms STRING PAC Record in ChlamyCyc
AMA1 g9070.t1, Cre08.g385500.t1.1 JGI118171 30773514 Search

Gene Expression

FPKM

Genome Browser

Regulatory Modules

Motif 1 Motif 2 Residual
bicluster_0003
motif_0003_1

motif_0003_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
1.5e-34
Motif Bicluster: 
bicluster_0003
Width: 
21
Number of Sites: 
1
Consensus: 
GCTGctGCtgcTGCTGctGCT
motif_0003_2

motif_0003_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
Motif Bicluster: 
bicluster_0003
Width: 
0
Number of Sites: 
1
 0.20
bicluster_0011
motif_0011_1

motif_0011_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.0000000000051
Motif Bicluster: 
bicluster_0011
Width: 
24
Number of Sites: 
1
Consensus: 
GCAGCaGCAGccGCaGCaGCAGCa
motif_0011_2

motif_0011_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.00091
Motif Bicluster: 
bicluster_0011
Width: 
24
Number of Sites: 
1
Consensus: 
GGCGGcgGcggcgGtgGCagngGc
 0.25

GO Terms

GO:0003824 GO:0043169 GO:0005975 GO:0004556 GO:0005509 -

catalytic activity

GO Category: 
molecular_function
Details: 
Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.

cation binding

GO Category: 
molecular_function
Details: 
Interacting selectively and non-covalently with cations, charged atoms or groups of atoms with a net positive charge.

carbohydrate metabolic process

GO Category: 
biological_process
Details: 
The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.

alpha-amylase activity

GO Category: 
molecular_function
Details: 
Catalysis of the endohydrolysis of (1->4)-alpha-D-glucosidic linkages in polysaccharides containing three or more alpha-(1->4)-linked D-glucose units.

calcium ion binding

GO Category: 
molecular_function
Details: 
Interacting selectively and non-covalently with calcium ions (Ca2+).

Regulated by

Displaying 1 - 2 of 2
Regulator Locus Interaction Weight Other Influences

Regulates

String Network

Link to STRING STRING Network
JGI118171

Add comment

Log in to post comments