Cre09.g398350.t1.2 U-box domain-containing protein

Summary

Chromosome Product Feature Type Transcript Start End Strand Length
Cre09.g398350.t1.2 chromosome_9 U-box domain-containing protein CDS 1446312 1454418 - 8 106

Phytozome

Locus Genomic View Functional Annotation
Cre09.g398350.t1.2 Cre09.g398350.t1.2

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Product Synonyms

Symbol Augustus Synonyms STRING PAC Record in ChlamyCyc
g9314.t1, Cre09.g398350.t1.1 JGI148383 30780774 Search

Gene Expression

FPKM

Genome Browser

Regulatory Modules

Motif 1 Motif 2 Residual
bicluster_0048
motif_0048_1

motif_0048_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
1.2e-18
Motif Bicluster: 
bicluster_0048
Width: 
24
Number of Sites: 
1
Consensus: 
GCAGgnGCAgcaGcAGCAGCaGCA
motif_0048_2

motif_0048_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.00000000046
Motif Bicluster: 
bicluster_0048
Width: 
21
Number of Sites: 
1
Consensus: 
GntGGcGGCGgTGGcGGcGGC
 0.21
bicluster_0063
motif_0063_1

motif_0063_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
6e-22
Motif Bicluster: 
bicluster_0063
Width: 
24
Number of Sites: 
1
Consensus: 
CtGCcGCcgCtGCtaCTGCtGccg
motif_0063_2

motif_0063_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.000000002
Motif Bicluster: 
bicluster_0063
Width: 
21
Number of Sites: 
1
Consensus: 
CGcaGCCGCTGCaGCTGgcGC
 0.22

GO Terms

GO:0004842 GO:0016567 GO:0000151 GO:0034450 GO:0006511 -

ubiquitin-protein ligase activity

GO Category: 
molecular_function
Details: 
Catalysis of the reaction: ATP + ubiquitin + protein lysine = AMP + diphosphate + protein N-ubiquityllysine.

protein ubiquitination

GO Category: 
biological_process
Details: 
The process in which one or more ubiquitin groups are added to a protein.

ubiquitin ligase complex

GO Category: 
cellular_component
Details: 
A protein complex that includes a ubiquitin-protein ligase and other proteins that may confer substrate specificity on the complex.

ubiquitin-ubiquitin ligase activity

GO Category: 
molecular_function
Details: 
Catalysis of the reaction: ATP + ubiquitin + protein N-ubiquityl(n)lysine = AMP + diphosphate + protein N-ubiquityl(n+1)lysine. This reaction is the ligation of ubiquitin groups, via isopeptide bonds, to extend the length of the multiubiquitin chain attached to a substrate protein.

ubiquitin-dependent protein catabolic process

GO Category: 
biological_process
Details: 
The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein.

Regulated by

Displaying 1 - 2 of 2
Regulator Locus Interaction Weight Other Influences

Regulates

String Network

Link to STRING STRING Network
JGI148383

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