Cre09.g398400.t1.2 Transient receptor potential ion channel protein

Summary

Chromosome Product Feature Type Transcript Start End Strand Length
Cre09.g398400.t1.2 chromosome_9 Transient receptor potential ion channel protein CDS 1436049 1446304 + 10 255

Phytozome

Locus Genomic View Functional Annotation
Cre09.g398400.t1.2 Cre09.g398400.t1.2

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Product Synonyms

Symbol Augustus Synonyms STRING PAC Record in ChlamyCyc
TRP5 g9313.t1, Cre09.g398400.t1.1 Not available 30781379 Search

Gene Expression

FPKM

Genome Browser

Regulatory Modules

Motif 1 Motif 2 Residual
bicluster_0081
motif_0081_1

motif_0081_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.0012
Motif Bicluster: 
bicluster_0081
Width: 
15
Number of Sites: 
1
Consensus: 
CTGCcGcTgCgACTG
motif_0081_2

motif_0081_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
21
Motif Bicluster: 
bicluster_0081
Width: 
24
Number of Sites: 
1
Consensus: 
cATAGGCAatAAaAggcATtgAag
 0.12
bicluster_0210
motif_0210_1

motif_0210_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:17
e.value: 
20
Motif Bicluster: 
bicluster_0210
Width: 
11
Number of Sites: 
1
Consensus: 
ATGcATGaAgA
motif_0210_2

motif_0210_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:17
e.value: 
0.15
Motif Bicluster: 
bicluster_0210
Width: 
21
Number of Sites: 
1
Consensus: 
GGCaGgAGcgGcAGtgGtaGC
 0.12

GO Terms

GO:0005216 GO:0006811 GO:0055085 GO:0016020 -

ion channel activity

GO Category: 
molecular_function
Details: 
Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism.

ion transport

GO Category: 
biological_process
Details: 
The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.

transmembrane transport

GO Category: 
biological_process
Details: 
The process in which a solute is transported from one side of a membrane to the other.

membrane

GO Category: 
cellular_component
Details: 
Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.

Regulated by

Displaying 1 - 2 of 2
Regulator Locus Interaction Weight Other Influences

Regulates

String Network

Link to STRING STRING Network

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