Cre09.g405150.t1.1 Pseudouridine synthase family protein

Summary

Chromosome Product Feature Type Transcript Start End Strand Length
Cre09.g405150.t1.1 chromosome_9 Pseudouridine synthase family protein CDS 6120610 6127495 - 6 885

Phytozome

Locus Genomic View Functional Annotation
Cre09.g405150.t1.1 Cre09.g405150.t1.1

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Product Synonyms

Symbol Augustus Synonyms STRING PAC Record in ChlamyCyc
PUS1 g10048.t1 JGI151084 30780723 Search

Gene Expression

FPKM

Genome Browser

Regulatory Modules

Motif 1 Motif 2 Residual
bicluster_0153
motif_0153_1

motif_0153_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.00000012
Motif Bicluster: 
bicluster_0153
Width: 
15
Number of Sites: 
1
Consensus: 
ACaCaCAnACACaCA
motif_0153_2

motif_0153_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
150
Motif Bicluster: 
bicluster_0153
Width: 
24
Number of Sites: 
1
Consensus: 
AACAAAGaaTcacctcagaCAtcA
 0.19
bicluster_0199
motif_0199_1

motif_0199_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.000031
Motif Bicluster: 
bicluster_0199
Width: 
21
Number of Sites: 
1
Consensus: 
GgCGatGGcGGcGGCgGcaGC
motif_0199_2

motif_0199_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.04
Motif Bicluster: 
bicluster_0199
Width: 
15
Number of Sites: 
1
Consensus: 
cGCagcTGCTgnTGC
 0.19

GO Terms

GO:0003723 GO:0009982 GO:0001522 GO:0009451 -

RNA binding

GO Category: 
molecular_function
Details: 
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.

pseudouridine synthase activity

GO Category: 
molecular_function
Details: 
Catalysis of the reaction: RNA uridine = RNA pseudouridine. Conversion of uridine in an RNA molecule to pseudouridine by rotation of the C1'-N-1 glycosidic bond of uridine in RNA to a C1'-C5.

pseudouridine synthesis

GO Category: 
biological_process
Details: 
The intramolecular conversion of uridine to pseudouridine within an RNA molecule. This posttranscriptional base modification occurs in tRNA, rRNA, and snRNAs.

RNA modification

GO Category: 
biological_process
Details: 
The covalent alteration of one or more nucleotides within an RNA molecule to produce an RNA molecule with a sequence that differs from that coded genetically.

Regulated by

Displaying 1 - 2 of 2
Regulator Locus Interaction Weight Other Influences

Regulates

String Network

Link to STRING STRING Network
JGI151084

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