Cre09.g415950.t1.2 Ribosomal protein L6 family

Summary

Chromosome Product Feature Type Transcript Start End Strand Length
Cre09.g415950.t1.2 chromosome_9 Ribosomal protein L6 family CDS 7723956 7725961 - 2 005

Phytozome

Locus Genomic View Functional Annotation
Cre09.g415950.t1.2 Cre09.g415950.t1.2

Help

Product Synonyms

Symbol Augustus Synonyms STRING PAC Record in ChlamyCyc
g10296.t1, Cre09.g415950.t1.1 JGI184687 30781212 Search

Gene Expression

FPKM

Genome Browser

Regulatory Modules

Motif 1 Motif 2 Residual
bicluster_0090
motif_0090_1

motif_0090_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
730
Motif Bicluster: 
bicluster_0090
Width: 
11
Number of Sites: 
1
Consensus: 
aTttGCAaTTT
motif_0090_2

motif_0090_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
890
Motif Bicluster: 
bicluster_0090
Width: 
18
Number of Sites: 
1
Consensus: 
TACACACACggATGCACa
 0.10
bicluster_0135
motif_0135_1

motif_0135_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
140
Motif Bicluster: 
bicluster_0135
Width: 
21
Number of Sites: 
1
Consensus: 
AaACaagAAAtGggCAAgaCa
motif_0135_2

motif_0135_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
390
Motif Bicluster: 
bicluster_0135
Width: 
11
Number of Sites: 
1
Consensus: 
AAtaTGCAGaC
 0.09

GO Terms

GO:0003735 GO:0019843 GO:0006412 GO:0005840 -

structural constituent of ribosome

GO Category: 
molecular_function
Details: 
The action of a molecule that contributes to the structural integrity of the ribosome.

rRNA binding

GO Category: 
molecular_function
Details: 
Interacting selectively and non-covalently with ribosomal RNA.

translation

GO Category: 
biological_process
Details: 
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.

ribosome

GO Category: 
cellular_component
Details: 
An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.

Regulated by

Displaying 1 - 2 of 2
Regulator Locus Interaction Weight Other Influences

Regulates

String Network

Link to STRING STRING Network
JGI184687

Add comment

Log in to post comments