Cre11.g467648.t1.1 rhomboid-like protein 11

Summary

Chromosome Product Feature Type Transcript Start End Strand Length
Cre11.g467648.t1.1 chromosome_11 rhomboid-like protein 11 CDS 833907 836885 + 2 978

Phytozome

Locus Genomic View Functional Annotation
Cre11.g467648.t1.1 Cre11.g467648.t1.1

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Product Synonyms

Symbol Augustus Synonyms STRING PAC Record in ChlamyCyc
RBL3 g11579.t1, Cre18.g746300.t1.1, Cre18.g746300.t1.2 Not available 30775516 Search

Gene Expression

FPKM

Genome Browser

Regulatory Modules

Motif 1 Motif 2 Residual
bicluster_0154
motif_0154_1

motif_0154_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
4e-18
Motif Bicluster: 
bicluster_0154
Width: 
24
Number of Sites: 
1
Consensus: 
cgCtGCcGCcgCtgctaCTGCcgC
motif_0154_2

motif_0154_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
Motif Bicluster: 
bicluster_0154
Width: 
0
Number of Sites: 
1
 0.21
bicluster_0174
motif_0174_1

motif_0174_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.76
Motif Bicluster: 
bicluster_0174
Width: 
19
Number of Sites: 
1
Consensus: 
TGtTGGTGTggGTGAtGaa
motif_0174_2

motif_0174_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
52
Motif Bicluster: 
bicluster_0174
Width: 
24
Number of Sites: 
1
Consensus: 
TtTtgcaTgtgTacATaAAGaAaA
 0.17

GO Terms

GO:0004252 GO:0016021 -

serine-type endopeptidase activity

GO Category: 
molecular_function
Details: 
Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).

integral to membrane

GO Category: 
cellular_component
Details: 
Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane.

Regulated by

Displaying 1 - 2 of 2
Regulator Locus Interaction Weight Other Influences

Regulates

String Network

Link to STRING STRING Network

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