Cre12.g490000.t1.2 Eukaryotic translation initiation factor 2 subunit 1

Summary

Chromosome Product Feature Type Transcript Start End Strand Length
Cre12.g490000.t1.2 chromosome_12 Eukaryotic translation initiation factor 2 subunit 1 CDS 1163350 1167519 + 4 169

Phytozome

Locus Genomic View Functional Annotation
Cre12.g490000.t1.2 Cre12.g490000.t1.2

Help

Product Synonyms

Symbol Augustus Synonyms STRING PAC Record in ChlamyCyc
EIF2A, EIF2A-2, EIF2Ab g12185.t1, Cre12.g490000.t1.1 JGI114912 30792971 Search

Gene Expression

FPKM

Genome Browser

Regulatory Modules

Motif 1 Motif 2 Residual
bicluster_0088
motif_0088_1

motif_0088_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.0015
Motif Bicluster: 
bicluster_0088
Width: 
23
Number of Sites: 
1
Consensus: 
CgCCagCaccgCCgCcgCCgcCa
motif_0088_2

motif_0088_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
2.7
Motif Bicluster: 
bicluster_0088
Width: 
15
Number of Sites: 
1
Consensus: 
TgtgatTgTaTTTna
 0.15
bicluster_0125
motif_0125_1

motif_0125_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.012
Motif Bicluster: 
bicluster_0125
Width: 
15
Number of Sites: 
1
Consensus: 
TaAAGgAGgnCAAGg
motif_0125_2

motif_0125_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
380
Motif Bicluster: 
bicluster_0125
Width: 
23
Number of Sites: 
1
Consensus: 
GCCAaTatatgAtActcAanATC
 0.16

GO Terms

GO:0003723 GO:0003743 GO:0005850 -

RNA binding

GO Category: 
molecular_function
Details: 
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.

translation initiation factor activity

GO Category: 
molecular_function
Details: 
Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide.

eukaryotic translation initiation factor 2 complex

GO Category: 
cellular_component
Details: 
Complex of three heterogeneous polypeptide chains, that form a ternary complex with initiator methionyl-tRNA and GTP. This ternary complex binds to free 40S subunit, which subsequently binds the 5' end of mRNA.

Regulated by

Displaying 1 - 2 of 2
Regulator Locus Interaction Weight Other Influences

Regulates

String Network

Link to STRING STRING Network
JGI114912

Add comment

Log in to post comments