Cre12.g520600.t1.2 Translation elongation factor EF1B/ribosomal protein S6 family protein

Chromosome Product Feature Type Transcript Start End Strand Length
Cre12.g520600.t1.2 chromosome_12 Translation elongation factor EF1B/ribosomal protein S6 family protein CDS 4393059 4394588 - 1 529
Locus Genomic View Functional Annotation
Cre12.g520600.t1.2 Cre12.g520600.t1.2

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Symbol Augustus Synonyms STRING PAC Record in ChlamyCyc
g12827.t1, Cre12.g520600.t1.1 JGI195632 30792817 Search
Motif 1 Motif 2 Residual
bicluster_0181

motif_0181_1

e.value: 
96000
Motif Bicluster: 
Width: 
14
Number of Sites: 
1
Consensus: 
TatncAAtAGtTTG

motif_0181_2

e.value: 
7500
Motif Bicluster: 
Width: 
15
Number of Sites: 
1
Consensus: 
CAGcAGCAgcGAGcn
0.13
bicluster_0202

motif_0202_1

e.value: 
330
Motif Bicluster: 
Width: 
20
Number of Sites: 
1
Consensus: 
ATGGTAAAcatnTtaGTATT

motif_0202_2

e.value: 
500
Motif Bicluster: 
Width: 
15
Number of Sites: 
1
Consensus: 
ATGAtGTaGTTgctG
0.05
GO:0003735 GO:0019843 GO:0006412 GO:0005840 -

structural constituent of ribosome

GO Category: 
molecular_function
Details: 
The action of a molecule that contributes to the structural integrity of the ribosome.

rRNA binding

GO Category: 
molecular_function
Details: 
Interacting selectively and non-covalently with ribosomal RNA.

translation

GO Category: 
biological_process
Details: 
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.

ribosome

GO Category: 
cellular_component
Details: 
An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.
Displaying 1 - 2 of 2
Regulator Locus Interaction Weight Other Influences
Link to STRING STRING Network
JGI195632
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