Cre12.g529500.t1.2 FtsJ-like methyltransferase family protein

Summary

Chromosome Product Feature Type Transcript Start End Strand Length
Cre12.g529500.t1.2 chromosome_12 FtsJ-like methyltransferase family protein CDS 5344943 5351729 + 6 786

Phytozome

Locus Genomic View Functional Annotation
Cre12.g529500.t1.2 Cre12.g529500.t1.2

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Product Synonyms

Symbol Augustus Synonyms STRING PAC Record in ChlamyCyc
RRM11 g13037.t1, Cre12.g529500.t1.1 JGI285292 30792231 Search

Gene Expression

FPKM

Genome Browser

Regulatory Modules

Motif 1 Motif 2 Residual
bicluster_0128
motif_0128_1

motif_0128_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
820
Motif Bicluster: 
bicluster_0128
Width: 
11
Number of Sites: 
1
Consensus: 
AAGAagAaAaA
motif_0128_2

motif_0128_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
66000
Motif Bicluster: 
bicluster_0128
Width: 
24
Number of Sites: 
1
Consensus: 
CCGctnCtGcTGcTGcTGCTGCnA
 0.13
bicluster_0145
motif_0145_1

motif_0145_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.00059
Motif Bicluster: 
bicluster_0145
Width: 
24
Number of Sites: 
1
Consensus: 
CAgCAgcgcCaGCAgCcaaAaCac
motif_0145_2

motif_0145_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
180
Motif Bicluster: 
bicluster_0145
Width: 
11
Number of Sites: 
1
Consensus: 
aAGAAGAaaAA
 0.14

GO Terms

GO:0008168 GO:0032259 GO:0006364 GO:0005634 -

methyltransferase activity

GO Category: 
molecular_function
Details: 
Catalysis of the transfer of a methyl group to an acceptor molecule.

methylation

GO Category: 
biological_process
Details: 
The process in which a methyl group is covalently attached to a molecule.

rRNA processing

GO Category: 
biological_process
Details: 
Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules.

nucleus

GO Category: 
cellular_component
Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

Regulated by

Displaying 1 - 2 of 2
Regulator Locus Interaction Weight Other Influences

Regulates

String Network

Link to STRING STRING Network
JGI285292

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