Cre12.g529600.t1.2 nuclear RNA polymerase A1

Summary

Chromosome Product Feature Type Transcript Start End Strand Length
Cre12.g529600.t1.2 chromosome_12 nuclear RNA polymerase A1 CDS 5357080 5367815 - 10 735

Phytozome

Locus Genomic View Functional Annotation
Cre12.g529600.t1.2 Cre12.g529600.t1.2

Help

Product Synonyms

Symbol Augustus Synonyms STRING PAC Record in ChlamyCyc
RPA1 g13039.t1, Cre12.g529600.t1.1 JGI176094 30792110 Search

Gene Expression

FPKM

Genome Browser

Regulatory Modules

Motif 1 Motif 2 Residual
bicluster_0061
motif_0061_1

motif_0061_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
13
Motif Bicluster: 
bicluster_0061
Width: 
21
Number of Sites: 
1
Consensus: 
AnnCATTTTcTtAaAagacaa
motif_0061_2

motif_0061_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
550
Motif Bicluster: 
bicluster_0061
Width: 
23
Number of Sites: 
1
Consensus: 
AaTAtnaTAatgTntgTGtatTt
 0.13
bicluster_0140
motif_0140_1

motif_0140_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
25
Motif Bicluster: 
bicluster_0140
Width: 
21
Number of Sites: 
1
Consensus: 
AataaCcaAnttTAtTGTaaT
motif_0140_2

motif_0140_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
15
Motif Bicluster: 
bicluster_0140
Width: 
15
Number of Sites: 
1
Consensus: 
tTGGTgTGctTgTTg
 0.11

GO Terms

GO:0003677 GO:0003899 GO:0006351 -

DNA binding

GO Category: 
molecular_function
Details: 
Any molecular function by which a gene product interacts selectively with DNA (deoxyribonucleic acid).

DNA-directed RNA polymerase activity

GO Category: 
molecular_function
Details: 
Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.

transcription, DNA-dependent

GO Category: 
biological_process
Details: 
The cellular synthesis of RNA on a template of DNA.

Regulated by

Displaying 1 - 2 of 2
Regulator Locus Interaction Weight Other Influences

Regulates

String Network

Link to STRING STRING Network
JGI176094

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