Cre13.g578750.t1.2 pyrimidine 1

Summary

Chromosome Product Feature Type Transcript Start End Strand Length
Cre13.g578750.t1.2 chromosome_13 pyrimidine 1 CDS 2254299 2259840 - 5 541

Phytozome

Locus Genomic View Functional Annotation
Cre13.g578750.t1.2 Cre13.g578750.t1.2

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Product Synonyms

Symbol Augustus Synonyms STRING PAC Record in ChlamyCyc
TBA1 g14218.t1, Cre13.g578750.t1.1 JGI134846 30784710 Search

Gene Expression

FPKM

Genome Browser

Regulatory Modules

Motif 1 Motif 2 Residual
bicluster_0043
motif_0043_1

motif_0043_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.00000000000005
Motif Bicluster: 
bicluster_0043
Width: 
24
Number of Sites: 
1
Consensus: 
AcaCAcaCAcacaCaCAcAtaaAc
motif_0043_2

motif_0043_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.0000000026
Motif Bicluster: 
bicluster_0043
Width: 
20
Number of Sites: 
1
Consensus: 
GGAGgtGggGgAgGanGgGG
 0.19
bicluster_0075
motif_0075_1

motif_0075_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
4.7e-16
Motif Bicluster: 
bicluster_0075
Width: 
21
Number of Sites: 
1
Consensus: 
AgCAGCaGCagCaGCaaCAGC
motif_0075_2

motif_0075_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.0000000000000095
Motif Bicluster: 
bicluster_0075
Width: 
23
Number of Sites: 
1
Consensus: 
GGtGGaGGtGGnGGaGgggGgGG
 0.23

GO Terms

GO:0004152 GO:0006222 GO:0055114 -

dihydroorotate dehydrogenase activity

GO Category: 
molecular_function
Details: 
Catalysis of the reaction: (S)-dihydroorotate + A = AH(2) + orotate.

UMP biosynthetic process

GO Category: 
biological_process
Details: 
The chemical reactions and pathways resulting in the formation of UMP, uridine monophosphate.

oxidation-reduction process

GO Category: 
biological_process
Details: 
A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

Regulated by

Displaying 1 - 2 of 2
Regulator Locus Interaction Weight Other Influences

Regulates

String Network

Link to STRING STRING Network
JGI134846

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