Cre16.g683500.t1.2 RNA helicase 36

Summary

Chromosome Product Feature Type Transcript Start End Strand Length
Cre16.g683500.t1.2 chromosome_16 RNA helicase 36 CDS 5152146 5156617 + 4 471

Phytozome

Locus Genomic View Functional Annotation
Cre16.g683500.t1.2 Cre16.g683500.t1.2

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Product Synonyms

Symbol Augustus Synonyms STRING PAC Record in ChlamyCyc
HEL64 g16432.t1, Cre16.g683500.t1.1 JGI396216 30777863 Search

Gene Expression

FPKM

Genome Browser

Regulatory Modules

Motif 1 Motif 2 Residual
bicluster_0046
motif_0046_1

motif_0046_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.00000000000039
Motif Bicluster: 
bicluster_0046
Width: 
21
Number of Sites: 
1
Consensus: 
CAgCAGcGgCtGCAGCAGCnG
motif_0046_2

motif_0046_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.088
Motif Bicluster: 
bicluster_0046
Width: 
21
Number of Sites: 
1
Consensus: 
tGGTggtGGcGGcGGcgGcGG
 0.22
bicluster_0137
motif_0137_1

motif_0137_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.000019
Motif Bicluster: 
bicluster_0137
Width: 
21
Number of Sites: 
1
Consensus: 
AGcagcAGcaaCAGcngnggc
motif_0137_2

motif_0137_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
Motif Bicluster: 
bicluster_0137
Width: 
0
Number of Sites: 
1
 0.28

GO Terms

GO:0003676 GO:0005524 GO:0008026 GO:0004386 -

nucleic acid binding

GO Category: 
molecular_function
Details: 
Interacting selectively and non-covalently with any nucleic acid.

ATP binding

GO Category: 
molecular_function
Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.

ATP-dependent helicase activity

GO Category: 
molecular_function
Details: 
Catalysis of the reaction: ATP + H2O = ADP + phosphate, to drive the unwinding of a DNA or RNA helix.

helicase activity

GO Category: 
molecular_function
Details: 
Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix.

Regulated by

Displaying 1 - 2 of 2
Regulator Locus Interaction Weight Other Influences

Regulates

String Network

Link to STRING STRING Network
JGI396216

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