Cre17.g697450.t1.2 RNA polymerase I-associated factor PAF67

Summary

Chromosome Product Feature Type Transcript Start End Strand Length
Cre17.g697450.t1.2 chromosome_17 RNA polymerase I-associated factor PAF67 CDS 181625 187314 - 5 689

Phytozome

Locus Genomic View Functional Annotation
Cre17.g697450.t1.2 Cre17.g697450.t1.2

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Product Synonyms

Symbol Augustus Synonyms STRING PAC Record in ChlamyCyc
g16914.t1, Cre17.g697450.t1.1 JGI128430 30782733 Search

Gene Expression

FPKM

Genome Browser

Regulatory Modules

Motif 1 Motif 2 Residual
bicluster_0127
motif_0127_1

motif_0127_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
8
Motif Bicluster: 
bicluster_0127
Width: 
24
Number of Sites: 
1
Consensus: 
CcAcCAgcgccGCCATCagcngcc
motif_0127_2

motif_0127_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
18
Motif Bicluster: 
bicluster_0127
Width: 
24
Number of Sites: 
1
Consensus: 
TTACatTcaTGatTAgcTaAGGaA
 0.16
bicluster_0167
motif_0167_1

motif_0167_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.000000042
Motif Bicluster: 
bicluster_0167
Width: 
15
Number of Sites: 
1
Consensus: 
CAGCAgCgcCGnCAG
motif_0167_2

motif_0167_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.00021
Motif Bicluster: 
bicluster_0167
Width: 
21
Number of Sites: 
1
Consensus: 
GCAGcAGcaGgAGcngcaccG
 0.21

GO Terms

GO:0003743 GO:0005737 GO:0005852 -

translation initiation factor activity

GO Category: 
molecular_function
Details: 
Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide.

cytoplasm

GO Category: 
cellular_component
Details: 
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

eukaryotic translation initiation factor 3 complex

GO Category: 
cellular_component
Details: 
A complex of several polypeptides that plays at least two important roles in protein synthesis: First, eIF3 binds to the 40S ribosome and facilitates loading of the Met-tRNA/eIF2.GTP ternary complex to form the 43S preinitiation complex. Subsequently, eIF3 apparently assists eIF4 in recruiting mRNAs to the 43S complex. The eIF3 complex contains five conserved core subunits, and may contain several additional proteins; the non-core subunits are thought to mediate association of the complex with specific sets of mRNAs.

Regulated by

Displaying 1 - 2 of 2
Regulator Locus Interaction Weight Other Influences

Regulates

String Network

Link to STRING STRING Network
JGI128430

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