Cre17.g727700.t1.1 DEAD box RNA helicase (RH3)

Summary

Chromosome Product Feature Type Transcript Start End Strand Length
Cre17.g727700.t1.1 chromosome_17 DEAD box RNA helicase (RH3) CDS 3786490 3793231 + 6 741

Phytozome

Locus Genomic View Functional Annotation
Cre17.g727700.t1.1 Cre17.g727700.t1.1

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Product Synonyms

Symbol Augustus Synonyms STRING PAC Record in ChlamyCyc
HEL65 g17592.t1 JGI119793 30782559 Search

Gene Expression

FPKM

Genome Browser

Regulatory Modules

Motif 1 Motif 2 Residual
bicluster_0128
motif_0128_1

motif_0128_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
820
Motif Bicluster: 
bicluster_0128
Width: 
11
Number of Sites: 
1
Consensus: 
AAGAagAaAaA
motif_0128_2

motif_0128_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
66000
Motif Bicluster: 
bicluster_0128
Width: 
24
Number of Sites: 
1
Consensus: 
CCGctnCtGcTGcTGcTGCTGCnA
 0.13
bicluster_0194
motif_0194_1

motif_0194_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
4.2
Motif Bicluster: 
bicluster_0194
Width: 
24
Number of Sites: 
1
Consensus: 
CTGCtGgTGgTGCTGtTGCTGCTG
motif_0194_2

motif_0194_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
170
Motif Bicluster: 
bicluster_0194
Width: 
11
Number of Sites: 
1
Consensus: 
gaGCAACAAAA
 0.14

GO Terms

GO:0003676 GO:0005524 GO:0008026 GO:0004386 -

nucleic acid binding

GO Category: 
molecular_function
Details: 
Interacting selectively and non-covalently with any nucleic acid.

ATP binding

GO Category: 
molecular_function
Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.

ATP-dependent helicase activity

GO Category: 
molecular_function
Details: 
Catalysis of the reaction: ATP + H2O = ADP + phosphate, to drive the unwinding of a DNA or RNA helix.

helicase activity

GO Category: 
molecular_function
Details: 
Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix.

Regulated by

Displaying 1 - 2 of 2
Regulator Locus Interaction Weight Other Influences

Regulates

String Network

Link to STRING STRING Network
JGI119793

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