Cre17.g731850.t1.2 short-chain dehydrogenase-reductase B

Summary

Chromosome Product Feature Type Transcript Start End Strand Length
Cre17.g731850.t1.2 chromosome_17 short-chain dehydrogenase-reductase B CDS 4429116 4432724 - 3 608

Phytozome

Locus Genomic View Functional Annotation
Cre17.g731850.t1.2 Cre17.g731850.t1.2

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Product Synonyms

Symbol Augustus Synonyms STRING PAC Record in ChlamyCyc
SDR29 g17688.t1, Cre17.g731850.t1.1 JGI409901 30781740 Search

Gene Expression

FPKM

Genome Browser

Regulatory Modules

Motif 1 Motif 2 Residual
bicluster_0004
motif_0004_1

motif_0004_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
7e-35
Motif Bicluster: 
bicluster_0004
Width: 
24
Number of Sites: 
1
Consensus: 
TgCTGCtgCTgCtgcTGCtGCngC
motif_0004_2

motif_0004_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
Motif Bicluster: 
bicluster_0004
Width: 
0
Number of Sites: 
1
 0.27
bicluster_0199
motif_0199_1

motif_0199_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.000031
Motif Bicluster: 
bicluster_0199
Width: 
21
Number of Sites: 
1
Consensus: 
GgCGatGGcGGcGGCgGcaGC
motif_0199_2

motif_0199_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.04
Motif Bicluster: 
bicluster_0199
Width: 
15
Number of Sites: 
1
Consensus: 
cGCagcTGCTgnTGC
 0.19

GO Terms

GO:0016491 GO:0008152 -

oxidoreductase activity

GO Category: 
molecular_function
Details: 
Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.

metabolic process

GO Category: 
biological_process
Details: 
The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.

Regulated by

Displaying 1 - 2 of 2
Regulator Locus Interaction Weight Other Influences

Regulates

String Network

Link to STRING STRING Network
JGI409901

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