Module 22 Residual: 0.51Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)

Summary

Residual	Motif 1 e-value	Motif 2 e-value	Conditions	Genes	version
0.51	0.000000058	0.00046	73	33	20160204

Motifs

Motif 1
	e-value: 0.000000058
Motif 2
	e-value: 0.00046

Module Plots

Members

MSMEG_5484 Uncharacterized protein	MSMEG_4696 Alpha-amylase family protein (Putative alpha-glucosidase) (EC 3.2.1.20)
MSMEG_5124 2,4-dienoyl-coA reductase (Putative 2,4-dienoyl-CoA reductase NADPH) (EC 1.3.1.34)	MSMEG_6344 Transcriptional regulator
MSMEG_6673 6-aminohexanoate-cyclic-dimer hydrolase (EC 3.5.2.12) (Amidase) (EC 3.5.1.4)	MSMEG_0340 Enoyl-CoA hydratase/isomerase family protein
MSMEG_5504 Conserved secreted protein	MSMEG_2389 DNA-binding protein HU homolog (Histone-like protein) (Hlp)
MSMEG_0873 Uncharacterized protein	MSMEG_3977 Luciferase-like protein (EC 1.5.99.11) (Uncharacterized protein)
MSMEG_4191 Uncharacterized protein	MSMEG_3976 DNA-binding protein (Transcriptional regulator, TetR family)
MSMEG_5919 Uncharacterized protein	MSMEG_3583 Monooxygenase
MSMEG_5918 P450 heme-thiolate protein	MSMEG_0486 Putative ABC transporter, periplasmic protein
MSMEG_1104 Uncharacterized protein	MSMEG_0487 ABC transporter permease (Binding-protein-dependent transport systems inner membrane component)
MSMEG_2654 30S ribosomal protein S15	MSMEG_4192 Uncharacterized protein
MSMEG_0011 FAD-binding 9, siderophore-interacting (Siderophore-interacting protein)	MSMEG_4334 Flavoprotein (Putative flavoprotein) (EC 2.5.1.26)
MSMEG_4335 Diacylglycerol kinase catalytic region (Uncharacterized protein)	MSMEG_4093 Oxidoreductase, aldo/keto reductase family (Oxidoreductase, aldo/keto reductase family protein)
MSMEG_5132 GTP-binding protein TypA/BipA (GTP-binding translation elongation factor TypA) (EC 3.6.5.3)	MSMEG_4091 Nitrilotriacetate monooxygenase component A (EC 1.14.13.-)
MSMEG_5135 Uncharacterized protein	MSMEG_2467 Branched-chain alpha-keto acid dehydrogenase E1 component (EC 1.2.4.4) (Transketolase, central region)
MSMEG_5887 Intersectin-EH binding protein Ibp1	MSMEG_0488 ABC transporter ATP-binding protein
MSMEG_5886 Enoyl-CoA hydratase	MSMEG_4092 Alkanal monooxygenase (Luciferase family protein) (EC 1.14.14.3)
MSMEG_0366 Uncharacterized protein

Conditions

Wild.type.rep1.y

KO_stationary.phase_rep2

WT.vs..DamtR.without.N_rep1

Biological.replicate.5.of.7..panaxydol.treatment

X3dbfcy5plogcy3slide601norm

Biological.replicate.4.of.6..negative.control

WT.with.vs..without.N_dye.swap_rep1

Biological.replicate.1.of.6..negative.control

Tet.CarD.vs.Control..Replicates.1..2..and.3.

dosR.WT_Replicate1

Biological.replicate.2.of.6..kanamycin.treatment

Wild.type.rep2.y

dosR.WT_Replicate4

Wild.type.rep1.x

DglnR_without.vs..with.N_rep1

DglnR_without.vs..with.N_rep2

MB100pruR.vs..MB100.rep.2

Biological.replicate.1.of.6..kanamycin.treatment

Bedaquiline.vs..DMSO.60min

Biological.replicate.6.of.6..kanamycin.treatment

M..smegmatis.Acid.NO.treated

Biological.replicate.4.of.6..isoniazid.treatment

WT_log.phase_rep2

X0.6..vs..50..air.saturation.Replicate.3

X0.6..vs..50..air.saturation.Replicate.2

X0.6..vs..50..air.saturation.Replicate.5

WT.vs..DamtR.N.surplus_rep2

M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep3

mc2155.vs.Dcrp1.replicate.2

Plogcy5plogcy3slide113norm

mc2155.vs.Dcrp1.replicate.1

mc2155.vs.Dcrp1.replicate.4

dcpA.knockout.rep2

dcpA.knockout.rep1

Biological.replicate.2.of.7..falcarinol.treatment

Plogcy5plogcy3slide111norm

Biological.replicate.5.of.6..negative.control

X2.5..vs..50..air.saturation.Replicate.4

X2.5..vs..50..air.saturation.Replicate.5

X3dbfcy3plogcy5slide607norm

WT_log.phase_rep1

Biological.replicate.4.of.7..panaxydol.treatment

X2.5..vs..50..air.saturation.Replicate.1

X2.5..vs..50..air.saturation.Replicate.3

WT_stationary.phase_rep2

WT_stationary.phase_rep1

Biological.replicate.1.of.7..ethambutol.treatment

mc2155.vs.Dcrp1.replicate.3

Slow.vs..Fast.Replicate.4

Stationary.cultures.control.without.induction.of.I.SceI.expression..T.0...Atc.

WT.with.vs..without.N_dye.swap_rep2

Biological.replicate.4.of.7..falcarinol.treatment

WT.vs..DglnR.N_starvation_dye.swap_rep1

WT.vs..DglnR.N_starvation_dye.swap_rep2

Slow.vs..Fast.Replicate.3

Biological.replicate.2.of.6..negative.control

mc2155.pMind..vs.mc2155.pMind.6189.replicate.4

Biological.replicate.5.of.6..kanamycin.treatment

mc2155.pMind..vs.mc2155.pMind.6189.replicate.2

mc2155.pMind..vs.mc2155.pMind.6189.replicate.1

WT.with.vs..without.N_rep2

WT.vs..DglnR.N_starvation_rep2

DglnR_without.vs..with.N_dyeswap_rep2

X2XR.rep1

X2XR.rep2

DglnR_without.vs..with.N_dyeswap_rep1

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep1

WT.vs..DglnR.N_starvation_rep1

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep2

BatchCulture_LBTbroth_StationaryPhase_Replicate2

BatchCulture_LBTbroth_StationaryPhase_Replicate3

dosR.WT_Replicate2

M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep2

Comments