Module 26 Residual: 0.57Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)

Summary

Residual	Motif 1 e-value	Motif 2 e-value	Conditions	Genes	version
0.57	0.000000000000023	0.0000000000024	78	29	20160204

Motifs

Motif 1
	e-value: 0.000000000000023
Motif 2
	e-value: 0.0000000000024

Module Plots

Members

MSMEG_6889 Transposase	MSMEG_0746 Carbon monoxide dehydrogenase (Large chain), CoxL (EC 1.2.99.2) (Carbon-monoxide dehydrogenase, large subunit)
MSMEG_4465 Cutinase (EC 3.1.1.74)	MSMEG_1308 Peptidase S15
MSMEG_4466 ABC transporter, permease protein UspA	MSMEG_5019 Regulatory protein
MSMEG_4467 ABC transporter, permease protein UspE	MSMEG_3324 Uncharacterized protein
MSMEG_4035 Citrate synthase (EC 2.3.3.1)	MSMEG_3322 Uncharacterized protein
MSMEG_4397 MerR-family transcriptional regulator (Transcriptional regulator, MerR family protein)	MSMEG_2809 MxaD protein (Uncharacterized protein)
MSMEG_2573 Uncharacterized protein	MSMEG_6890 Antibiotic biosynthesis monooxygenase domain protein
MSMEG_2574 Uncharacterized protein	MSMEG_1968 Putative oxidoreductase (EC 1.-.-.-) (Short-chain dehydrogenase/reductase SDR) (EC 1.1.1.100)
MSMEG_0358 R2-like ligand binding oxidase (EC 1.-.-.-) (Ribonucleotide reductase R2 subunit homolog) (Ribonucleotide reductase small subunit homolog)	MSMEG_1969 MerR-family protein transcriptional regulator (MerR-family transcriptional regulator)
MSMEG_4398 Putative monooxygenase (Uncharacterized protein)	MSMEG_6437 Copper resistance protein D
MSMEG_0749 Carbon monoxide dehydrogenase subunit G (Carbon monoxide dehydrogenase subunit G (CoxG) family protein)	MSMEG_6436 Copper resistance protein CopC
MSMEG_0748 ATPase associated with various cellular activities, AAA_5	MSMEG_0751 Uncharacterized protein (VWA containing CoxE-like protein)
MSMEG_0745 Carbon monoxide dehydrogenase (Small chain), CoxS (EC 1.2.99.2) ([2Fe-2S] binding domain protein)	MSMEG_2405 MarR-family protein transcriptional regulator
MSMEG_0744 Carbon monoxide dehydrogenase medium chain (Carbon monoxide dehydrogenase, medium subunit) (EC 1.2.99.2)	MSMEG_2406 Transcriptional regulator, TetR family (Transcriptional regulator, TetR family protein, putative)
MSMEG_0747 Carbon monoxide dehydrogenase F protein

Conditions

Bedaquiline.vs..DMSO.30min

WT.vs..DamtR.without.N_rep1

Wild.type.rep2.y

Bedaquiline.vs..DMSO.15min

DamtR.with.vs..DamtR.without.N_.rep1

Mycobacterium.smegmatis.Spheroplast.induced

Wild.type.rep2.x

Biological.replicate.2.of.7..falcarinol.treatment

dosR.WT_Replicate1

Biological.replicate.4.of.6..kanamycin.treatment

Stationary.cultures.induced.to.express.I.SceI.for.45.minutes..T.45...ATc.

WT.vs..DamtR.N.surplus_dyeswap_rep2

DglnR_without.vs..with.N_rep1

DglnR_without.vs..with.N_rep2

Biological.replicate.6.of.6..negative.control

Biological.replicate.1.of.6..kanamycin.treatment

Biological.replicate.1.of.7..ethambutol.treatment

Biological.replicate.6.of.6..kanamycin.treatment

Biological.replicate.3.of.6..kanamycin.treatment

rel.knockout.rep1

Bedaquiline.vs..DMSO..45min

MB100pruR.vs..MB100.rep.2

Biological.replicate.6.of.7..panaxydol.treatment

WT_log.phase_rep2

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep3

Biological.replicate.3.of.6..isoniazid.treatment

DamtR.with.vs..DamtR.without.N_.rep2

X0.6..vs..50..air.saturation.Replicate.1

X3dbfcy5plogcy3slide601norm

X0.6..vs..50..air.saturation.Replicate.3

M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep1

X0.6..vs..50..air.saturation.Replicate.4

M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep3

Stationary.phase.cultures.induced.to.express.I.SceI.for.15.minutes..T.15...ATc.

stphcy5plogcy3slide487norm

mc2155.vs.Dcrp1.replicate.1

Biological.replicate.2.of.7..ethambutol.treatment

mc2155.vs.Dcrp1.replicate.4

WT.vs..DamtR.N.surplus_rep2

dcpA.knockout.rep2

dcpA.knockout.rep1

WT.vs..DamtR.N.surplus_rep1

Biological.replicate.2.of.6..isoniazid.treatment

X2.5..vs..50..air.saturation.Replicate.4

WT.with.vs..without.N_dye.swap_rep1

X3dbfcy3plogcy5slide607norm

Biological.replicate.4.of.7..panaxydol.treatment

X2.5..vs..50..air.saturation.Replicate.1

WT.with.vs..without.N_dye.swap_rep2

Log.phase.cultures.induced.to.express.I.SceI.for.45.minutes..T.45...ATc.

Biological.replicate.6.of.6..isoniazid.treatment

X4XR.rep2

X4XR.rep1

Slow.vs..Fast.Replicate.4

Slow.vs..Fast.Replicate.5

Bedaquiline.vs..DMSO.60min

Biological.replicate.5.of.6..isoniazid.treatment

WT.vs..DglnR.N_starvation_dye.swap_rep1

Slow.vs..Fast.Replicate.2

Slow.vs..Fast.Replicate.3

BatchCulture_LBTbroth_ExponentialPhase_Replicate3

mc2155.pMind..vs.mc2155.pMind.6189.replicate.3

WT.vs..DamtR.N.surplus_.dyeswap_rep1

WT.with.vs..without.N_rep2

Log.phase.cultures.without.induction.of.I.SceI.expression..T.0...Atc.

WT.with.vs..without.N_rep1

WT.vs..DglnR.N_starvation_dye.swap_rep2

X2XR.rep1

X2XR.rep2

Biological.replicate.3.of.7..ethambutol.treatment

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep1

WT.vs..DglnR.N_starvation_rep1

BatchCulture_LBTbroth_StationaryPhase_Replicate4

Sub.MIC.INH

M..smegmatis.Acid.NO.treated

Biological.replicate.4.of.6..isoniazid.treatment

M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep1

X4dbfcy3plogcy5slide903norm

Comments