Module 42 Residual: 0.60
Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)
| Residual | Motif 1 e-value | Motif 2 e-value | Conditions | Genes | version |
|---|---|---|---|---|---|
| 0.60 | 1.6e-16 | 5.8e-16 | 80 | 29 | 20160204 |
| Motif 1 |
 |
|---|---|
| e-value: 1.6e-16 | |
| Motif 2 |
 |
| e-value: 5.8e-16 |
| MSMEG_5775 LytR/CpsA/Psr family protein | MSMEG_4519 Conserved hypothetical membrane protein (NrtC protein) |
| MSMEG_2499 ABC transporter, membrane spanning protein, putative (ABC transporter, permease protein) | MSMEG_2501 ABC nitrate/sulfonate/bicarbonate family protein transporter, inner membrane subunit (Binding-protein-dependent transport systems inner membrane component) |
| MSMEG_2160 Uncharacterized protein | MSMEG_6302 DNA ligase C1 (EC 6.5.1.1) (Polydeoxyribonucleotide synthase [ATP]) |
| MSMEG_6370 Alkyl hydroperoxide reductase AhpD (EC 1.11.1.15) | MSMEG_2503 Bacterial periplasmic substrate-binding protein (Uncharacterized protein) |
| MSMEG_6371 GntR-family protein regulator (GntR-family transcriptional regulator) (EC 2.6.1.39) | MSMEG_2502 Transporter ATPase |
| MSMEG_4343 Uncharacterized protein | MSMEG_2505 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) |
| MSMEG_4346 Uncharacterized protein | MSMEG_2504 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) |
| MSMEG_0693 Uncharacterized protein | MSMEG_2507 IclR-family protein transcriptional regulator |
| MSMEG_0692 Conserved hypothetical proline and threonine rich protein (Uncharacterized protein) | MSMEG_2506 Carboxyvinyl-carboxyphosphonate phosphorylmutase (EC 2.7.8.23) (Isocitrate lyase family protein) (EC 4.1.3.32) |
| MSMEG_0691 LuxR family transcriptional regulator (Putative transcriptional regulatory protein) | MSMEG_2031 Uncharacterized protein |
| MSMEG_6301 DNA polymerase LigD, polymerase domain | MSMEG_2032 Uncharacterized protein |
| MSMEG_2095 Cutinase Cut4 (EC 3.1.1.74) (Serine esterase, cutinase family protein) | MSMEG_5145 Extracellular solute-binding protein, family protein 1 |
| MSMEG_2094 56kDa selenium binding protein (EC 1.3.1.1) | MSMEG_5146 Binding protein dependent transport protein (Putative binding-protein-dependent transport protein) |
| MSMEG_4517 TetR-type transcriptional regulator of sulfur metabolism | MSMEG_5147 Binding-protein-dependent transport systems inner membrane component (Sugar ABC-transporter integral membrane protein) |
| MSMEG_4518 Alpha-helical coiled-coil protein (Uncharacterized protein) |
KO_stationary.phase_rep1
KO_stationary.phase_rep2
WT.vs..DglnR.N_starvation_rep2
WT.vs..DamtR.without.N_rep1
Wild.type.rep2.y
WT.vs..DamtR.without.N_rep2
Biological.replicate.4.of.6..negative.control
dosR.WT_Replicate4
Bedaquiline.vs..DMSO.30min
Biological.replicate.1.of.6..negative.control
dosR.WT_Replicate3
dosR.WT_Replicate2
Biological.replicate.2.of.6..kanamycin.treatment
KO_log.phase_rep1
Stationary.cultures.control.without.induction.of.I.SceI.expression..T.0...Atc.
Wild.type.rep1.y
MB100pruR.vs..MB100.rep.4
MB100pruR.vs..MB100.rep.2
DglnR_without.vs..with.N_rep2
WT.vs..DamtR.without.N_.dyeswap_rep2
Biological.replicate.1.of.6..isoniazid.treatment
Biological.replicate.7.of.7..ethambutol.treatment
Bedaquiline.vs..DMSO.60min
WT.with.vs..without.N_dye.swap_rep1
rel.knockout.rep2
rel.knockout.rep1
Bedaquiline.vs..DMSO..45min
Biological.replicate.6.of.7..panaxydol.treatment
Biological.replicate.3.of.7..ethambutol.treatment
Biological.replicate.3.of.6..isoniazid.treatment
X3dbfcy5plogcy3slide601norm
X0.6..vs..50..air.saturation.Replicate.2
X0.6..vs..50..air.saturation.Replicate.5
Biological.replicate.6.of.7..ethambutol.treatment
WT.vs..DamtR.N.surplus_rep1
M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep2
Biological.replicate.1.of.7..panaxydol.treatment
mc2155.vs.Dcrp1.replicate.4
X0.6..vs..50..air.saturation.Replicate.4
dcpA.knockout.rep2
Plogcy5plogcy3slide111norm
Biological.replicate.5.of.6..negative.control
WT_log.phase_rep2
X2.5..vs..50..air.saturation.Replicate.5
Biological.replicate.4.of.7..panaxydol.treatment
mc2155.pMind..vs.mc2155.pMind.6189.replicate.4
X2.5..vs..50..air.saturation.Replicate.3
WT_stationary.phase_rep2
Biological.replicate.6.of.6..isoniazid.treatment
Biological.replicate.5.of.7..ethambutol.treatment
Tet.CarD.vs.Control..Replicates.1..2..and.3.
Slow.vs..Fast.Replicate.5
WT.with.vs..without.N_dye.swap_rep2
Biological.replicate.4.of.7..falcarinol.treatment
Slow.vs..Fast.Replicate.1
Slow.vs..Fast.Replicate.2
Biological.replicate.3.of.7..falcarinol.treatment
BatchCulture_LBTbroth_ExponentialPhase_Replicate2
BatchCulture_LBTbroth_ExponentialPhase_Replicate3
X4dbfcy5plogcy3slide480norm
mc2155.pMind..vs.mc2155.pMind.6189.replicate.2
mc2155.pMind..vs.mc2155.pMind.6189.replicate.3
X4dbfcy5plogcy3slide901norm
WT.vs..DamtR.N.surplus_dyeswap_rep2
WT.vs..DglnR.N_starvation_rep1
Log.phase.cultures.without.induction.of.I.SceI.expression..T.0...Atc.
JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep4
X2XR.rep1
X2XR.rep2
JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep1
BatchCulture_LBTbroth_StationaryPhase_Replicate4
Sub.MIC.INH
BatchCulture_LBTbroth_StationaryPhase_Replicate2
BatchCulture_LBTbroth_StationaryPhase_Replicate3
BatchCulture_LBTbroth_StationaryPhase_Replicate1
M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep3
M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep2
Stationary.phase.cultures.induced.to.express.I.SceI.for.15.minutes..T.15...ATc.
WT.vs..DamtR.N.surplus_rep2
Bedaquiline.vs..DMSO.120min
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