Module 55 Residual: 0.57
Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)
| Residual | Motif 1 e-value | Motif 2 e-value | Conditions | Genes | version |
|---|---|---|---|---|---|
| 0.57 | 1.4e-19 | 0.0000059 | 76 | 28 | 20160204 |
| Motif 1 |
 |
|---|---|
| e-value: 1.4e-19 | |
| Motif 2 |
 |
| e-value: 0.0000059 |
| MSMEG_6862 Putative transcription regulator (TetR family transcriptional regulator) | MSMEG_0450 Uncharacterized protein |
| MSMEG_5776 Phosphate-specific transport system accessory protein PhoU | MSMEG_6834 Alcohol dehydrogenase (Alcohol dehydrogenase (ADH-HT) oxidoreductase-like protein) (EC 1.1.1.1) |
| MSMEG_6861 Cupin 2, conserved barrel (Cupin domain protein) | MSMEG_5749 Uncharacterized protein |
| MSMEG_3312 Hemerythrin HHE cation binding domain subfamily protein, putative | MSMEG_4655 AraC-family transcriptional regulator (Transcriptional regulator, AraC family protein) |
| MSMEG_4468 Bacterial extracellular solute-binding protein UspC (Periplasmic sugar-binding lipoprotein UspC) | MSMEG_4654 Aldo/keto reductase (EC 1.1.1.91) |
| MSMEG_5750 Uncharacterized protein | MSMEG_5724 Bacterial regulatory protein, MarR family protein (MarR family regulatory protein) |
| MSMEG_3469 TetR family protein transcriptional regulator (TetR family transcriptional regulator) | MSMEG_3572 Transcriptional regulator, TetR family (Transcriptional regulator, TetR family protein) |
| MSMEG_6290 DNA-binding protein (Putative DNA-binding protein) | MSMEG_5723 Endoribonuclease L-PSP (Endoribonuclease L-psp family protein) |
| MSMEG_5612 Amino-acid acetyltransferase | MSMEG_0656 Transcriptional regulator, TetR family protein |
| MSMEG_2317 NADP-dependent alcohol dehydrogenase C 2 (Ms-ADHC 2) (EC 1.1.1.2) | MSMEG_0527 2-hydroxycyclohexnecarboxyl-CoA dehydrogenase (Short-chain dehydrogenase/reductase SDR) |
| MSMEG_1706 Xylose transport system permease protein XylH (EC 3.6.3.17) | MSMEG_6340 Short-chain dehydrogenase/reductase SDR (EC 1.1.1.100) |
| MSMEG_1704 ABC transporter (ABC transporter sugar-binding protein) (EC 3.6.3.17) | MSMEG_1037 NADP-dependent alcohol dehydrogenase C 1 (Ms-ADHC 1) (EC 1.1.1.2) |
| MSMEG_1705 ABC transporter (ATP-binding protein) (D-xylose transport ATP-binding protein XylG) (EC 3.6.3.17) | MSMEG_2743 Transcriptional repressor NrdR |
| MSMEG_3470 NAD-dependent epimerase/dehydratase (EC 5.1.3.2) | MSMEG_1138 Alcohol dehydrogenase (Alcohol dehydrogenase 1) (EC 1.1.1.1) |
KO_stationary.phase_rep2
Biological.replicate.5.of.7..falcarinol.treatment
WT.vs..DamtR.without.N_rep1
KO_log.phase_rep1
Biological.replicate.5.of.7..panaxydol.treatment
Biological.replicate.4.of.6..negative.control
X3dbfcy5plogcy3slide603norm
Biological.replicate.3.of.7..falcarinol.treatment
Bedaquiline.vs..DMSO.30min
X2XR.rep1
Biological.replicate.4.of.6..kanamycin.treatment
Wild.type.rep2.y
Plogcy5plogcy3slide110norm
MB100pruR.vs..MB100.rep.4
MB100pruR.vs..MB100.rep.2
DglnR_without.vs..with.N_rep2
MB100pruR.vs..MB100.rep.1
Biological.replicate.7.of.7..ethambutol.treatment
Biological.replicate.1.of.7..ethambutol.treatment
Biological.replicate.6.of.6..kanamycin.treatment
rel.knockout.rep2
Bedaquiline.vs..DMSO..45min
Biological.replicate.1.of.7..falcarinol.treatment
Biological.replicate.6.of.7..falcarinol.treatment
Bedaquiline.vs..DMSO.15min
WT.vs..DglnR.N_starvation_dye.swap_rep2
JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep3
Biological.replicate.1.of.6..negative.control
X0.6..vs..50..air.saturation.Replicate.5
X0.6..vs..50..air.saturation.Replicate.4
M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep3
mc2155.vs.Dcrp1.replicate.2
Plogcy5plogcy3slide113norm
Biological.replicate.1.of.6..kanamycin.treatment
Biological.replicate.2.of.7..ethambutol.treatment
mc2155.vs.Dcrp1.replicate.4
WT.vs..DamtR.N.surplus_rep2
dcpA.knockout.rep2
Stationary.cultures.control.without.induction.of.I.SceI.expression..T.0...Atc.
WT.vs..DamtR.N.surplus_rep1
Biological.replicate.5.of.6..isoniazid.treatment
X2.5..vs..50..air.saturation.Replicate.4
X2.5..vs..50..air.saturation.Replicate.5
stphcy3plogcy5slide581norm
WT_log.phase_rep1
Biological.replicate.4.of.7..panaxydol.treatment
X2.5..vs..50..air.saturation.Replicate.1
X2.5..vs..50..air.saturation.Replicate.2
WT_stationary.phase_rep1
Biological.replicate.6.of.6..isoniazid.treatment
DamtR.with.vs..DamtR.without.N_dyeswap_.rep1
mc2155.vs.Dcrp1.replicate.3
Tet.CarD.vs.Control..Replicates.1..2..and.3.
Slow.vs..Fast.Replicate.5
Bedaquiline.vs..DMSO.60min
Biological.replicate.4.of.7..falcarinol.treatment
Slow.vs..Fast.Replicate.2
Slow.vs..Fast.Replicate.3
Biological.replicate.5.of.6..negative.control
X4dbfcy5plogcy3slide480norm
Biological.replicate.5.of.6..kanamycin.treatment
M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep1
Log.phase.cultures.without.induction.of.I.SceI.expression..T.0...Atc.
WT.vs..DamtR.N.surplus_.dyeswap_rep1
Log.phase.cultures.induced.to.express.I.SceI.for.45.minutes..T.45...ATc.
X2XR.rep2
DglnR_without.vs..with.N_dyeswap_rep1
JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep1
BatchCulture_LBTbroth_StationaryPhase_Replicate4
BatchCulture_LBTbroth_StationaryPhase_Replicate2
M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep3
Biological.replicate.4.of.6..isoniazid.treatment
M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep1
Biological.replicate.3.of.6..negative.control
X4dbfcy3plogcy5slide903norm
Bedaquiline.vs..DMSO.120min
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