Module 65 Residual: 0.48Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)

Summary

Residual	Motif 1 e-value	Motif 2 e-value	Conditions	Genes	version
0.48	0.000000000036	0.000025	86	16	20160204

Motifs

Motif 1
	e-value: 0.000000000036
Motif 2
	e-value: 0.000025

Module Plots

Members

MSMEG_6026 3-hydroxybutyrate dehydrogenase (EC 1.1.1.30)	MSMEG_3266 Extracellular solute-binding protein family 1 (Maltose/maltodextrin-binding protein)
MSMEG_6027 Major facilitator superfamily protein MFS_1	MSMEG_3272 Ribose 5-phosphate isomerase (EC 5.3.1.6)
MSMEG_6024 Acetoacetyl-CoA synthase (EC 6.2.1.16)	MSMEG_1507 D-aminopeptidase (Peptidase S58 DmpA (D-aminopeptidase)) (EC 3.4.11.19)
MSMEG_3264 Transcriptional regulator (Transcriptional regulator, DeoR family) (EC 2.7.1.69)	MSMEG_3262 L-xylulose reductase (EC 1.1.1.10)
MSMEG_1508 Amino acid permease-associated region	MSMEG_6028 Transcriptional regulator, LysR family (Transcriptional regulator, LysR family protein)
MSMEG_3269 ABC transporter related protein (Putative sugar ABC transporter ATP-binding protein)	MSMEG_3270 SN-glycerol-3-phosphate ABC transporter, ATP-binding protein (Sugar ABC transporter, ATP-binding protein)
MSMEG_3268 ABC transporter, permease protein (Binding-protein-dependent transport systems inner membrane component)	MSMEG_3271 Dihydroxyacetone kinase (Putative dihydroxyacetone (Glycerone) kinase protein) (EC 2.7.1.29)
MSMEG_3267 Binding-protein-dependent transport systems inner membrane component (Transporter)	MSMEG_3265 Alcohol dehydrogenase, zinc-binding protein (EC 1.1.1.-) (Arabitol-phosphate dehydrogenase)

Conditions

KO_stationary.phase_rep1

KO_stationary.phase_rep2

Wild.type.rep2.x

MB100pruR.vs..MB100.rep.1

Biological.replicate.1.of.7..falcarinol.treatment

Biological.replicate.6.of.7..panaxydol.treatment

DamtR.with.vs..DamtR.without.N_.rep1

WT.vs..DamtR.N.surplus_rep1

stphcy5plogcy3slide580norm

X3dbfcy5plogcy3slide601norm

Biological.replicate.2.of.7..ethambutol.treatment

Biological.replicate.4.of.7..falcarinol.treatment

Biological.replicate.6.of.7..ethambutol.treatment

X4dbfcy5plogcy3slide901norm

WT.vs..DamtR.without.N_rep2

Biological.replicate.4.of.6..negative.control

Biological.replicate.2.of.7..panaxydol.treatment

Biological.replicate.7.of.7..falcarinol.treatment

Biological.replicate.3.of.7..panaxydol.treatment

Biological.replicate.6.of.6..negative.control

Biological.replicate.1.of.6..kanamycin.treatment

Biological.replicate.1.of.7..ethambutol.treatment

Biological.replicate.2.of.7..falcarinol.treatment

Biological.replicate.1.of.7..panaxydol.treatment

Biological.replicate.3.of.6..negative.control

Stationary.phase.cultures.induced.to.express.I.SceI.for.15.minutes..T.15...ATc.

WT.with.vs..without.N_dye.swap_rep1

WT.with.vs..without.N_dye.swap_rep2

WT.vs..DglnR.N_starvation_dye.swap_rep1

WT.vs..DglnR.N_starvation_dye.swap_rep2

Biological.replicate.7.of.7..panaxydol.treatment

mc2155.pMind..vs.mc2155.pMind.6189.replicate.4

mc2155.pMind..vs.mc2155.pMind.6189.replicate.2

mc2155.pMind..vs.mc2155.pMind.6189.replicate.3

mc2155.pMind..vs.mc2155.pMind.6189.replicate.1

WT.vs..DglnR.N_starvation_rep1

WT.vs..DglnR.N_starvation_rep2

X2XR.rep2

MB100pruR.vs..MB100..rep.3

Stationary.cultures.induced.to.express.I.SceI.for.45.minutes..T.45...ATc.

Slow.vs..Fast.Replicate.5

DglnR_without.vs..with.N_rep1

DglnR_without.vs..with.N_rep2

Biological.replicate.6.of.6..kanamycin.treatment

Biological.replicate.3.of.6..kanamycin.treatment

rel.knockout.rep1

Biological.replicate.6.of.7..falcarinol.treatment

Biological.replicate.3.of.6..isoniazid.treatment

Biological.replicate.5.of.6..kanamycin.treatment

Biological.replicate.2.of.6..isoniazid.treatment

BatchCulture_LBTbroth_ExponentialPhase_Replicate2

BatchCulture_LBTbroth_ExponentialPhase_Replicate3

X4dbfcy5plogcy3slide480norm

Plogcy5plogcy3slide113norm

Biological.replicate.2.of.6..negative.control

M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep2

M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep1

Bedaquiline.vs..DMSO.30min

WT.with.vs..without.N_rep1

Wild.type.rep1.x

WT.vs..DamtR.without.N_.dyeswap_rep2

Biological.replicate.1.of.6..isoniazid.treatment

Biological.replicate.4.of.6..isoniazid.treatment

mc2155.vs.Dcrp1.replicate.1

X3dbfcy3plogcy5slide607norm

dcpA.knockout.rep2

dcpA.knockout.rep1

X2.5..vs..50..air.saturation.Replicate.5

Biological.replicate.4.of.7..panaxydol.treatment

X2.5..vs..50..air.saturation.Replicate.2

X2.5..vs..50..air.saturation.Replicate.3

X4XR.rep2

X4XR.rep1

Slow.vs..Fast.Replicate.4

Stationary.cultures.control.without.induction.of.I.SceI.expression..T.0...Atc.

Slow.vs..Fast.Replicate.1

Biological.replicate.5.of.6..negative.control

WT.with.vs..without.N_rep2

Biological.replicate.5.of.7..falcarinol.treatment

DglnR_without.vs..with.N_dyeswap_rep2

Biological.replicate.1.of.6..negative.control

DglnR_without.vs..with.N_dyeswap_rep1

BatchCulture_LBTbroth_StationaryPhase_Replicate4

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep2

BatchCulture_LBTbroth_StationaryPhase_Replicate2

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep4

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