Module 73 Residual: 0.48Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)

Summary

Residual	Motif 1 e-value	Motif 2 e-value	Conditions	Genes	version
0.48	2e-29	0.0000019	78	33	20160204

Motifs

Motif 1
	e-value: 2e-29
Motif 2
	e-value: 0.0000019

Module Plots

Members

MSMEG_5105 Uncharacterized protein	MSMEG_3597 Uncharacterized protein
MSMEG_3339 Uncharacterized protein	MSMEG_2292
MSMEG_6440 FAD-containing monooxygenase EthA (EC 1.14.13.-) (Baeyer-Villiger monooxygenase) (BVMO) (Prodrug activator EtaA)	MSMEG_5854 Transcriptional regulator, TetR family protein
MSMEG_6441 HTH-type transcriptional regulator EthR	MSMEG_4573 Competence protein (Uncharacterized protein)
MSMEG_1809 Sulfurtransferase	MSMEG_2787 Bifunctional enzyme riboflavin biosynthesis protein ribD : diaminohydroxyphosphoribosylaminopyrimidine deaminase + 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193) (Putative riboflavin biosynthesis protein RibD)
MSMEG_1808 Fe-S metabolism associated SufE	MSMEG_1754 Uncharacterized protein
MSMEG_5349 Uncharacterized protein	MSMEG_5804 Uncharacterized protein
MSMEG_1603 Uncharacterized oxidoreductase MSMEG_1603/MSMEI_1564 (EC 1.-.-.-)	MSMEG_6245 Chloramphenicol exporter (Chloramphenicol resistance protein)
MSMEG_4739 Uncharacterized protein	MSMEG_0564 Xanthine/uracil permease (Xanthine/uracil/vitamin C permease)
MSMEG_1061 Phosphohydrolase (Pyridoxamine 5'-phosphate oxidase-related FMN-binding protein)	MSMEG_2997 Acyl-CoA thioesterase (Uncharacterized protein)
MSMEG_4526 Uncharacterized protein	MSMEG_2401 Uncharacterized protein
MSMEG_6196 Gaba permease	MSMEG_3973 N-methylhydantoinase (EC 3.5.2.9)
MSMEG_6194 Beta-lactamase related protein (Putative beta-lactamase)	MSMEG_1136 Uncharacterized protein
MSMEG_2619 Efflux protein (Integral membrane efflux protein EfpA)	MSMEG_4253 GDP-mannose-dependent alpha-(1-6)-phosphatidylinositol monomannoside mannosyltransferase (EC 2.4.1.57) (Alpha-D-mannose-alpha-(1-6)-phosphatidylmyo-inositol-mannosyltransferase) (Alpha-mannosyltransferase) (Alpha-ManT) (Guanosine diphosphomannose-phosphatidyl-inositol alpha-mannosyltransferase) (Phosphatidylinositol alpha-mannosyltransferase) (PI alpha-mannosyltransferase)
MSMEG_3598 ABC transporter, carbohydrate uptake transporter-2 (CUT2) family, periplasmic sugar-binding protein (EC 3.6.3.17) (Periplasmic sugar-binding proteins)	MSMEG_0223 Uncharacterized protein
MSMEG_1121 Uncharacterized protein	MSMEG_2441 Signal peptidase I (EC 3.4.21.89)
MSMEG_0222 Uncharacterized protein

Conditions

KO_stationary.phase_rep2

WT.vs..DamtR.without.N_rep1

Bedaquiline.vs..DMSO.15min

Biological.replicate.4.of.6..negative.control

Wild.type.rep2.x

Biological.replicate.3.of.7..falcarinol.treatment

Biological.replicate.1.of.6..negative.control

dosR.WT_Replicate3

dosR.WT_Replicate1

KO_log.phase_rep2

WT.vs..DamtR.N.surplus_dyeswap_rep2

Wild.type.rep1.x

Wild.type.rep1.y

MB100pruR.vs..MB100.rep.4

MB100pruR.vs..MB100.rep.2

WT.vs..DamtR.without.N_.dyeswap_rep1

MB100pruR.vs..MB100.rep.1

Biological.replicate.1.of.6..isoniazid.treatment

Biological.replicate.1.of.7..ethambutol.treatment

Biological.replicate.2.of.7..falcarinol.treatment

Wild.type.rep3

Bedaquiline.vs..DMSO..45min

Biological.replicate.6.of.6..negative.control

Biological.replicate.6.of.7..panaxydol.treatment

M..smegmatis.Acid.NO.treated

WT.vs..DglnR.N_starvation_dye.swap_rep1

X0.6..vs..50..air.saturation.Replicate.1

WT_log.phase_rep2

M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep1

WT.vs..DamtR.N.surplus_rep2

M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep3

mc2155.vs.Dcrp1.replicate.2

stphcy5plogcy3slide487norm

Biological.replicate.7.of.7..panaxydol.treatment

Biological.replicate.1.of.7..panaxydol.treatment

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep4

dcpA.knockout.rep2

Biological.replicate.2.of.6..isoniazid.treatment

WT.vs..DamtR.N.surplus_rep1

Plogcy5plogcy3slide111norm

Biological.replicate.5.of.6..isoniazid.treatment

X2.5..vs..50..air.saturation.Replicate.4

Biological.replicate.4.of.7..ethambutol.treatment

X3dbfcy3plogcy5slide607norm

WT_log.phase_rep1

Biological.replicate.4.of.7..panaxydol.treatment

mc2155.pMind..vs.mc2155.pMind.6189.replicate.4

X2.5..vs..50..air.saturation.Replicate.2

Biological.replicate.2.of.6..negative.control

WT_stationary.phase_rep1

X4XR.rep2

Biological.replicate.2.of.7..ethambutol.treatment

mc2155.vs.Dcrp1.replicate.3

Tet.CarD.vs.Control..Replicates.1..2..and.3.

Stationary.cultures.control.without.induction.of.I.SceI.expression..T.0...Atc.

Bedaquiline.vs..DMSO.60min

Biological.replicate.2.of.6..kanamycin.treatment

Slow.vs..Fast.Replicate.1

Biological.replicate.6.of.7..ethambutol.treatment

Slow.vs..Fast.Replicate.3

BatchCulture_LBTbroth_ExponentialPhase_Replicate2

Biological.replicate.5.of.6..negative.control

X3dbfcy5plogcy3slide603norm

mc2155.pMind..vs.mc2155.pMind.6189.replicate.2

mc2155.pMind..vs.mc2155.pMind.6189.replicate.3

BatchCulture_LBTbroth_ExponentialPhase_Replicate4

WT.vs..DamtR.N.surplus_.dyeswap_rep1

WT.vs..DglnR.N_starvation_rep2

X2XR.rep1

X2XR.rep2

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep1

Plogcy5plogcy3slide113norm

BatchCulture_LBTbroth_StationaryPhase_Replicate3

M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep3

M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep2

M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep1

Biological.replicate.3.of.6..negative.control

Bedaquiline.vs..DMSO.120min

Comments