Module 77 Residual: 0.61
Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)
| Residual | Motif 1 e-value | Motif 2 e-value | Conditions | Genes | version |
|---|---|---|---|---|---|
| 0.61 | 4800 | 1100 | 72 | 33 | 20160204 |
| Motif 1 |
 |
|---|---|
| e-value: 4800 | |
| Motif 2 |
 |
| e-value: 1100 |
| MSMEG_4448 Probable endoribonuclease MazF (EC 3.1.-.-) (Toxin MazF) | MSMEG_5819 Pyridoxamine 5'-phosphate oxidase family protein (Pyridoxamine 5'-phosphate oxidase-related FMN-binding protein) |
| MSMEG_3310 Integral membrane protein | MSMEG_3648 Glycine cleavage system H protein |
| MSMEG_0964 Pyridoxamine 5'-phosphate oxidase family protein (Uncharacterized protein) | MSMEG_2593 Gnat-family protein acetyltransferase |
| MSMEG_6611 Uncharacterized protein | MSMEG_3920 Uncharacterized protein |
| MSMEG_0962 TetR-family protein transcriptional regulator (Transcriptional regulator, TetR family) | MSMEG_2594 Asparagine synthase (Glutamine-hydrolyzing) (Asparagine synthase, glutamine-hydrolyzing) (EC 6.3.5.4) |
| MSMEG_1606 Benzoylformate decarboxylase (EC 4.1.1.7) | MSMEG_6627 Nitroreductase (Nitroreductase family protein) |
| MSMEG_1605 Phosphate-specific transport system accessory protein PhoU | MSMEG_6604 Transcriptional regulator, TetR family (Transcriptional regulator, TetR family protein) |
| MSMEG_0687 Uncharacterized protein | MSMEG_3619 Short chain dehydrogenase (Short-chain dehydrogenase/reductase SDR) (EC 1.1.1.-) |
| MSMEG_3883 5'-3' exonuclease | MSMEG_6283 FAD binding domain protein (FAD linked oxidase-like protein) |
| MSMEG_5249 Serine hydroxymethyltransferase (SHMT) (Serine methylase) (EC 2.1.2.1) | MSMEG_3360 Transcriptional regulator, TetR family (Transcriptional regulator, putative) |
| MSMEG_3544 Uncharacterized protein | MSMEG_6284 Cyclopropane fatty-acyl-phospholipid synthase (EC 2.1.1.79) (Cyclopropane-fatty-acyl-phospholipid synthase) |
| MSMEG_1478 Lysine exporter protein (LYSE/YGGA) (Transporter, LysE family protein) | MSMEG_5430 Retinol dehydrogenase 13 (EC 1.1.1.-) (Short-chain dehydrogenase/reductase SDR) |
| MSMEG_3922 Uncharacterized protein | MSMEG_2744 Phenazine biosynthesis PhzC/PhzF protein (Thymidylate synthase) |
| MSMEG_3847 Amine oxidase (EC 1.4.3.-) | MSMEG_0678 Deoxycytidine triphosphate deaminase (dCTP deaminase) (EC 3.5.4.13) |
| MSMEG_4280 Short chain dehydrogenase (Short-chain dehydrogenase/reductase SDR) (EC 1.1.1.-) | MSMEG_3919 Uncharacterized protein |
| MSMEG_3286 Methyltransferase | MSMEG_0339 FMN-dependent monooxygenase |
| MSMEG_2799 Phospho-2-dehydro-3-deoxyheptonate aldolase (EC 2.5.1.54) (3-deoxy-D-arabino-heptulosonate 7-phosphate synthase) (DAHP synthase) (Phospho-2-keto-3-deoxyheptonate aldolase) |
KO_stationary.phase_rep1
Bedaquiline.vs..DMSO.30min
Wild.type.rep2.y
WT.vs..DamtR.without.N_rep2
Mycobacterium.smegmatis.Spheroplast.induced
dosR.WT_Replicate4
Biological.replicate.4.of.7..ethambutol.treatment
dosR.WT_Replicate3
dosR.WT_Replicate2
dosR.WT_Replicate1
Biological.replicate.5.of.6..negative.control
Stationary.cultures.induced.to.express.I.SceI.for.45.minutes..T.45...ATc.
KO_log.phase_rep1
Plogcy5plogcy3slide110norm
DglnR_without.vs..with.N_rep1
MB100pruR.vs..MB100.rep.4
MB100pruR.vs..MB100.rep.1
Biological.replicate.1.of.6..isoniazid.treatment
Biological.replicate.7.of.7..ethambutol.treatment
Biological.replicate.6.of.6..kanamycin.treatment
rel.knockout.rep2
Wild.type.rep3
Bedaquiline.vs..DMSO..45min
Biological.replicate.1.of.7..falcarinol.treatment
Biological.replicate.6.of.7..panaxydol.treatment
DamtR.with.vs..DamtR.without.N_.rep1
Biological.replicate.4.of.6..isoniazid.treatment
Biological.replicate.3.of.6..isoniazid.treatment
X0.6..vs..50..air.saturation.Replicate.1
Biological.replicate.2.of.6..kanamycin.treatment
Biological.replicate.4.of.6..kanamycin.treatment
X0.6..vs..50..air.saturation.Replicate.5
X0.6..vs..50..air.saturation.Replicate.4
Biological.replicate.2.of.7..falcarinol.treatment
stphcy5plogcy3slide487norm
Biological.replicate.1.of.6..kanamycin.treatment
Biological.replicate.4.of.6..negative.control
WT.vs..DamtR.N.surplus_rep2
mc2155.vs.Dcrp1.replicate.3
stphcy5plogcy3slide580norm
X3dbfcy5plogcy3slide601norm
Stationary.phase.cultures.induced.to.express.I.SceI.for.15.minutes..T.15...ATc.
stphcy3plogcy5slide581norm
X4dbfcy5plogcy3slide480norm
X2.5..vs..50..air.saturation.Replicate.2
X2.5..vs..50..air.saturation.Replicate.1
WT_stationary.phase_rep2
Log.phase.cultures.induced.to.express.I.SceI.for.45.minutes..T.45...ATc.
DamtR.with.vs..DamtR.without.N_dyeswap_.rep1
Biological.replicate.5.of.7..ethambutol.treatment
Slow.vs..Fast.Replicate.5
Bedaquiline.vs..DMSO.60min
Slow.vs..Fast.Replicate.2
BatchCulture_LBTbroth_ExponentialPhase_Replicate2
BatchCulture_LBTbroth_ExponentialPhase_Replicate3
X3dbfcy5plogcy3slide603norm
Biological.replicate.5.of.6..kanamycin.treatment
mc2155.pMind..vs.mc2155.pMind.6189.replicate.3
X4dbfcy5plogcy3slide901norm
WT.vs..DamtR.N.surplus_.dyeswap_rep1
Log.phase.cultures.without.induction.of.I.SceI.expression..T.0...Atc.
WT.with.vs..without.N_rep1
Biological.replicate.1.of.6..negative.control
X2XR.rep2
WT.vs..DglnR.N_starvation_dye.swap_rep2
BatchCulture_LBTbroth_StationaryPhase_Replicate4
BatchCulture_LBTbroth_StationaryPhase_Replicate3
BatchCulture_LBTbroth_StationaryPhase_Replicate1
M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep3
M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep2
M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep1
Bedaquiline.vs..DMSO.120min
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