Module 79 Residual: 0.59Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)

Summary

Residual	Motif 1 e-value	Motif 2 e-value	Conditions	Genes	version
0.59	7.4e-27	0.000000000003	83	34	20160204

Motifs

Motif 1
	e-value: 7.4e-27
Motif 2
	e-value: 0.000000000003

Module Plots

Members

MSMEG_5747 Uncharacterized protein	MSMEG_0855 Uncharacterized protein
MSMEG_4565 Aldo/keto reductase (EC 1.1.1.65) (Oxidoreductase)	MSMEG_1927 Cobyrinic Acid a,c-diamide synthase
MSMEG_6179 Acetyl-coenzyme A synthetase (AcCoA synthetase) (Acs) (EC 6.2.1.1) (Acetate--CoA ligase) (Acyl-activating enzyme)	MSMEG_6747 Oxidoreductase (Zinc-binding oxidoreductase) (EC 1.6.5.5)
MSMEG_3156 Uncharacterized protein	MSMEG_6746 Oxidoreductase, aldo/keto reductase family (Oxidoreductase, aldo/keto reductase family protein)
MSMEG_6464 Uncharacterized protein	MSMEG_4907 Mov34/MPN/PAD-1 (Mov34/MPN/PAD-1 family protein)
MSMEG_5837 Glutathione peroxidase	MSMEG_4906 ThiS family protein
MSMEG_4955 Homoserine kinase (HK) (HSK) (EC 2.7.1.39)	MSMEG_4905 Cysteine synthase B (EC 2.5.1.47)
MSMEG_4956 Threonine synthase (TS) (EC 4.2.3.1)	MSMEG_1776 Ribonuclease Z (RNase Z) (EC 3.1.26.11) (tRNA 3 endonuclease) (tRNase Z)
MSMEG_4957 Homoserine dehydrogenase (EC 1.1.1.3)	MSMEG_4124 Uncharacterized protein
MSMEG_4564 CBS domain protein (Putative signal-transduction protein with CBS domains)	MSMEG_3183 L-threonine dehydratase (EC 4.3.1.19) (Threonine deaminase)
MSMEG_4958 Diaminopimelate decarboxylase (DAP decarboxylase) (DAPDC) (EC 4.1.1.20)	MSMEG_1527 tRNA pseudouridine synthase A (EC 5.4.99.12) (tRNA pseudouridine(38-40) synthase) (tRNA pseudouridylate synthase I) (tRNA-uridine isomerase I)
MSMEG_4959 Arginine--tRNA ligase (EC 6.1.1.19) (Arginyl-tRNA synthetase) (ArgRS)	MSMEG_1524 DNA-directed RNA polymerase subunit alpha (RNAP subunit alpha) (EC 2.7.7.6) (RNA polymerase subunit alpha) (Transcriptase subunit alpha)
MSMEG_3065 Fmu (Sun) (Ribosomal RNA small subunit methyltransferase B) (EC 2.1.1.-)	MSMEG_1525 50S ribosomal protein L17
MSMEG_4323 Pyruvate dehydrogenase E1 component (PDH E1 component) (EC 1.2.4.1)	MSMEG_0024 Peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8)
MSMEG_4322 Uncharacterized protein	MSMEG_4271 Uncharacterized protein
MSMEG_3064 Methionyl-tRNA formyltransferase (EC 2.1.2.9)	MSMEG_4270 Adenosine kinase (Carbohydrate kinase CbhK) (EC 2.7.1.20)
MSMEG_2960 Preprotein translocase, YajC subunit (Protein translocase subunit yajC)	MSMEG_0023 Cell wall synthesis protein CwsA (Cell wall synthesis and cell shape protein A)

Conditions

mc2155.vs.Dcrp1.replicate.1

KO_stationary.phase_rep2

Biological.replicate.5.of.7..falcarinol.treatment

Biological.replicate.3.of.6..kanamycin.treatment

Stationary.phase.cultures.induced.to.express.I.SceI.for.15.minutes..T.15...ATc.

Mycobacterium.smegmatis.Spheroplast.induced

Plogcy5plogcy3slide110norm

Bedaquiline.vs..DMSO.30min

MB100pruR.vs..MB100..rep.3

Tet.CarD.vs.Control..Replicates.1..2..and.3.

dosR.WT_Replicate1

Biological.replicate.5.of.6..negative.control

Biological.replicate.2.of.6..kanamycin.treatment

Biological.replicate.7.of.7..falcarinol.treatment

X3dbfcy5plogcy3slide601norm

Wild.type.rep1.y

Biological.replicate.3.of.7..panaxydol.treatment

Biological.replicate.6.of.6..negative.control

Biological.replicate.1.of.6..kanamycin.treatment

mc2155.vs.Dcrp1.replicate.3

Biological.replicate.6.of.6..kanamycin.treatment

Biological.replicate.3.of.7..falcarinol.treatment

X4XR.rep1

Biological.replicate.1.of.7..falcarinol.treatment

Biological.replicate.5.of.6..isoniazid.treatment

Biological.replicate.6.of.7..falcarinol.treatment

Biological.replicate.4.of.6..isoniazid.treatment

Biological.replicate.4.of.6..kanamycin.treatment

DamtR.with.vs..DamtR.without.N_.rep2

X0.6..vs..50..air.saturation.Replicate.1

WT_log.phase_rep2

X0.6..vs..50..air.saturation.Replicate.3

X0.6..vs..50..air.saturation.Replicate.5

M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep3

M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep2

mc2155.vs.Dcrp1.replicate.2

M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep1

Biological.replicate.7.of.7..panaxydol.treatment

Biological.replicate.1.of.7..panaxydol.treatment

mc2155.vs.Dcrp1.replicate.4

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep4

Biological.replicate.5.of.6..kanamycin.treatment

dcpA.knockout.rep2

Biological.replicate.2.of.6..isoniazid.treatment

Biological.replicate.2.of.7..falcarinol.treatment

X3dbfcy5plogcy3slide603norm

stphcy5plogcy3slide580norm

X2.5..vs..50..air.saturation.Replicate.4

WT.with.vs..without.N_dye.swap_rep1

X3dbfcy3plogcy5slide607norm

Biological.replicate.4.of.7..panaxydol.treatment

X2.5..vs..50..air.saturation.Replicate.1

WT.with.vs..without.N_dye.swap_rep2

Biological.replicate.2.of.6..negative.control

Biological.replicate.6.of.6..isoniazid.treatment

X4XR.rep2

Biological.replicate.5.of.7..ethambutol.treatment

Slow.vs..Fast.Replicate.4

mc2155.pMind..vs.mc2155.pMind.6189.replicate.4

Bedaquiline.vs..DMSO.60min

Biological.replicate.4.of.7..falcarinol.treatment

Slow.vs..Fast.Replicate.1

Slow.vs..Fast.Replicate.3

Biological.replicate.4.of.6..negative.control

X4dbfcy5plogcy3slide480norm

BatchCulture_LBTbroth_ExponentialPhase_Replicate1

mc2155.pMind..vs.mc2155.pMind.6189.replicate.2

X4dbfcy5plogcy3slide901norm

BatchCulture_LBTbroth_ExponentialPhase_Replicate4

WT.vs..DamtR.N.surplus_.dyeswap_rep1

WT.with.vs..without.N_rep2

WT.with.vs..without.N_rep1

Wild.type.rep2.x

X2XR.rep2

WT.vs..DamtR.N.surplus_dyeswap_rep2

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep3

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep2

Plogcy5plogcy3slide113norm

BatchCulture_LBTbroth_StationaryPhase_Replicate3

BatchCulture_LBTbroth_StationaryPhase_Replicate1

M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep3

M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep1

Biological.replicate.3.of.6..negative.control

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