Module 80 Residual: 0.51Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)

Summary

Residual	Motif 1 e-value	Motif 2 e-value	Conditions	Genes	version
0.51	3.4e-22	0.0000000000091	88	17	20160204

Motifs

Motif 1
	e-value: 3.4e-22
Motif 2
	e-value: 0.0000000000091

Module Plots

Members

MSMEG_1369 LacI-family protein transcriptional regulator (LacI-family transcriptional regulator) (EC 5.1.1.1)	MSMEG_1370 2-deoxy-scyllo-inosamine dehydrogenase (EC 1.1.1.-)
MSMEG_6679 Metallo-beta-lactamase family protein	MSMEG_0165 Protein FdhD homolog
MSMEG_4658 Sugar ABC transporter substrate-binding protein	MSMEG_0164 Transmembrane transport protein
MSMEG_4659 GntR-family protein transcriptional regulator (GntR-family transcriptional regulator)	MSMEG_4656 Sugar ABC transporter ATP-binding protein (EC 3.6.3.17)
MSMEG_6677 LysR family regulatory protein (Transcriptional regulator, LysR family protein)	MSMEG_4661 Sugar kinase, ribokinase family protein
MSMEG_1374 Ribose ABC transporter, periplasmic binding protein	MSMEG_4657 ABC transporter membrane protein (ABC transporter sugar permease)
MSMEG_1373 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components	MSMEG_1283 Antitoxin VapB
MSMEG_1372 ABC transporter ATP-binding protein (Sugar ABC transporter, ATP binding protein) (EC 3.6.3.-)	MSMEG_1284 Ribonuclease VapC (RNase VapC) (EC 3.1.-.-) (Endoribonuclease VapC) (Toxin VapC)
MSMEG_1371 Phosphomannose isomerase-like protein (EC 5.3.1.8) (Uncharacterized protein)

Conditions

KO_stationary.phase_rep1

Biological.replicate.4.of.7..ethambutol.treatment

Wild.type.rep2.x

MB100pruR.vs..MB100.rep.4

MB100pruR.vs..MB100.rep.1

Biological.replicate.1.of.7..falcarinol.treatment

Biological.replicate.6.of.7..panaxydol.treatment

WT.vs..DamtR.N.surplus_rep2

WT.vs..DamtR.N.surplus_rep1

stphcy5plogcy3slide487norm

X3dbfcy5plogcy3slide601norm

X3dbfcy3plogcy5slide607norm

Biological.replicate.4.of.7..falcarinol.treatment

Log.phase.cultures.without.induction.of.I.SceI.expression..T.0...Atc.

Bedaquiline.vs..DMSO.120min

WT.vs..DamtR.without.N_rep2

Biological.replicate.4.of.6..negative.control

Plogcy5plogcy3slide110norm

Biological.replicate.3.of.7..panaxydol.treatment

Biological.replicate.2.of.7..falcarinol.treatment

Biological.replicate.1.of.7..panaxydol.treatment

Biological.replicate.3.of.6..negative.control

WT_log.phase_rep2

Stationary.phase.cultures.induced.to.express.I.SceI.for.15.minutes..T.15...ATc.

WT_log.phase_rep1

WT.with.vs..without.N_dye.swap_rep1

WT.with.vs..without.N_dye.swap_rep2

Bedaquiline.vs..DMSO.60min

WT.vs..DglnR.N_starvation_dye.swap_rep1

WT.vs..DglnR.N_starvation_dye.swap_rep2

mc2155.pMind..vs.mc2155.pMind.6189.replicate.4

mc2155.pMind..vs.mc2155.pMind.6189.replicate.2

mc2155.pMind..vs.mc2155.pMind.6189.replicate.3

mc2155.pMind..vs.mc2155.pMind.6189.replicate.1

WT.vs..DglnR.N_starvation_rep1

WT.vs..DglnR.N_starvation_rep2

X2XR.rep1

Sub.MIC.INH

BatchCulture_LBTbroth_StationaryPhase_Replicate4

Biological.replicate.3.of.6..isoniazid.treatment

Biological.replicate.6.of.6..kanamycin.treatment

Biological.replicate.3.of.6..kanamycin.treatment

Biological.replicate.4.of.6..kanamycin.treatment

M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep1

M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep2

Biological.replicate.5.of.6..kanamycin.treatment

WT_stationary.phase_rep2

Biological.replicate.2.of.6..isoniazid.treatment

BatchCulture_LBTbroth_ExponentialPhase_Replicate2

X4dbfcy5plogcy3slide480norm

BatchCulture_LBTbroth_ExponentialPhase_Replicate1

M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep2

Bedaquiline.vs..DMSO.30min

KO_log.phase_rep2

KO_log.phase_rep1

Wild.type.rep1.x

WT.vs..DamtR.without.N_.dyeswap_rep2

Biological.replicate.1.of.6..isoniazid.treatment

Biological.replicate.7.of.7..ethambutol.treatment

Biological.replicate.3.of.7..falcarinol.treatment

Biological.replicate.3.of.7..ethambutol.treatment

X0.6..vs..50..air.saturation.Replicate.1

X0.6..vs..50..air.saturation.Replicate.3

X0.6..vs..50..air.saturation.Replicate.2

X0.6..vs..50..air.saturation.Replicate.5

mc2155.vs.Dcrp1.replicate.2

mc2155.vs.Dcrp1.replicate.3

mc2155.vs.Dcrp1.replicate.1

mc2155.vs.Dcrp1.replicate.4

dcpA.knockout.rep1

X2.5..vs..50..air.saturation.Replicate.5

X2.5..vs..50..air.saturation.Replicate.2

X4XR.rep2

X4XR.rep1

Slow.vs..Fast.Replicate.4

Slow.vs..Fast.Replicate.5

Biological.replicate.5.of.6..isoniazid.treatment

Slow.vs..Fast.Replicate.1

Slow.vs..Fast.Replicate.2

Slow.vs..Fast.Replicate.3

Biological.replicate.5.of.6..negative.control

WT.vs..DamtR.N.surplus_.dyeswap_rep1

WT.with.vs..without.N_rep2

WT.with.vs..without.N_rep1

DglnR_without.vs..with.N_dyeswap_rep1

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep1

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep3

Biological.replicate.2.of.6..kanamycin.treatment

Comments