Module 95 Residual: 0.57Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)

Summary

Residual	Motif 1 e-value	Motif 2 e-value	Conditions	Genes	version
0.57	0.000000088	10	77	32	20160204

Motifs

Motif 1
	e-value: 0.000000088
Motif 2
	e-value: 10

Module Plots

Members

MSMEG_1916 Uncharacterized protein	MSMEG_2615 Chelatase (Protoporphyrin IX magnesium-chelatase) (EC 6.6.1.1)
MSMEG_1850 L-seryl-tRNA(Sec) selenium transferase (EC 2.9.1.1) (Selenocysteine synthase) (Selenocysteinyl-tRNA(Sec) synthase)	MSMEG_2614 ElaA protein (GCN5-related N-acetyltransferase)
MSMEG_1887 Uncharacterized protein	MSMEG_2617 Hydrogenobyrinate a,c-diamide synthase (EC 6.3.5.9) (Hydrogenobyrinic acid a,c-diamide synthase)
MSMEG_1918 Sensor histidine kinase (Uncharacterized protein)	MSMEG_2616 Cob(I)alamin adenosyltransferase (EC 2.5.1.17)
MSMEG_5303 Sodium/proline symporter	MSMEG_5502 AAA ATPase containing von Willebrand factor type A (VWA) domain-like protein (Uncharacterized protein)
MSMEG_2125 Glycerol operon regulatory protein	MSMEG_4747 Uncharacterized protein
MSMEG_2124 Glycerol uptake facilitator, MIP channel	MSMEG_5438 Ribosomal RNA small subunit methyltransferase A (EC 2.1.1.182) (16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase) (16S rRNA dimethyladenosine transferase) (16S rRNA dimethylase) (S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase)
MSMEG_1849 Selenocysteine-specific translation elongation factor (Selenocysteine-specific translation elongation factor, SelB)	MSMEG_4000 Hypothetical ABC transporter ATP-binding protein YphE
MSMEG_6433 Uncharacterized protein	MSMEG_4001 Permease protein of sugar ABC transporter (Ribose transport system permease protein RbsC) (EC 3.6.3.17)
MSMEG_6079 DNA repair protein RadA homolog (DNA repair protein Sms homolog)	MSMEG_0731 Adenylate cyclase (Uncharacterized protein)
MSMEG_2350 Probable S-adenosylmethionine-dependent methyltransferase MSMEG_2350/MSMEI_2290 (EC 2.1.1.-)	MSMEG_0732 Chaperone protein ClpB
MSMEG_2678 Uncharacterized protein	MSMEG_6435 Uncharacterized protein
MSMEG_4748 Uncharacterized protein	MSMEG_6434 Uncharacterized protein
MSMEG_2618 Putative multifunctional enzyme siroheme synthase Cysg (EC 2.1.1.107) (Uroporphyrin-III C-methyltransferase)	MSMEG_1674 Uncharacterized protein
MSMEG_2613 Probable malate:quinone oxidoreductase (EC 1.1.5.4) (MQO) (Malate dehydrogenase [quinone])	MSMEG_4338 Possible transcriptional regulatory protein
MSMEG_3808 UvrABC system protein A (UvrA protein) (Excinuclease ABC subunit A)	MSMEG_1852 Selenide, water dikinase (EC 2.7.9.3)

Conditions

KO_stationary.phase_rep2

Biological.replicate.5.of.7..ethambutol.treatment

WT.vs..DamtR.without.N_rep1

Biological.replicate.2.of.7..panaxydol.treatment

WT.vs..DamtR.without.N_rep2

dosR.WT_Replicate4

Biological.replicate.4.of.7..ethambutol.treatment

Bedaquiline.vs..DMSO.30min

MB100pruR.vs..MB100..rep.3

Tet.CarD.vs.Control..Replicates.1..2..and.3.

KO_log.phase_rep2

Stationary.cultures.induced.to.express.I.SceI.for.45.minutes..T.45...ATc.

Plogcy5plogcy3slide110norm

Biological.replicate.7.of.7..falcarinol.treatment

MB100pruR.vs..MB100.rep.4

Biological.replicate.2.of.7..ethambutol.treatment

DglnR_without.vs..with.N_rep2

WT.vs..DamtR.without.N_.dyeswap_rep2

MB100pruR.vs..MB100.rep.1

Biological.replicate.7.of.7..ethambutol.treatment

mc2155.pMind..vs.mc2155.pMind.6189.replicate.1

Biological.replicate.1.of.6..kanamycin.treatment

rel.knockout.rep2

DglnR_without.vs..with.N_rep1

Biological.replicate.6.of.7..falcarinol.treatment

Bedaquiline.vs..DMSO.15min

M..smegmatis.Acid.NO.treated

Biological.replicate.4.of.6..isoniazid.treatment

WT.vs..DamtR.without.N_.dyeswap_rep1

X0.6..vs..50..air.saturation.Replicate.2

dosR.WT_Replicate2

WT.vs..DglnR.N_starvation_dye.swap_rep2

M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep3

M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep2

mc2155.vs.Dcrp1.replicate.3

Slow.vs..Fast.Replicate.3

Biological.replicate.1.of.7..panaxydol.treatment

mc2155.vs.Dcrp1.replicate.4

dcpA.knockout.rep2

Biological.replicate.2.of.6..isoniazid.treatment

Biological.replicate.2.of.7..falcarinol.treatment

Plogcy5plogcy3slide111norm

Biological.replicate.5.of.6..isoniazid.treatment

WT_log.phase_rep2

stphcy3plogcy5slide581norm

Biological.replicate.4.of.7..panaxydol.treatment

mc2155.pMind..vs.mc2155.pMind.6189.replicate.4

X2.5..vs..50..air.saturation.Replicate.2

X2.5..vs..50..air.saturation.Replicate.3

Biological.replicate.2.of.6..negative.control

WT.vs..DglnR.N_starvation_dye.swap_rep1

X4XR.rep2

DamtR.with.vs..DamtR.without.N_dyeswap_.rep1

X4XR.rep1

Slow.vs..Fast.Replicate.4

Bedaquiline.vs..DMSO.60min

Biological.replicate.4.of.7..falcarinol.treatment

Slow.vs..Fast.Replicate.1

Slow.vs..Fast.Replicate.2

Biological.replicate.7.of.7..panaxydol.treatment

BatchCulture_LBTbroth_ExponentialPhase_Replicate2

Biological.replicate.5.of.6..negative.control

X3dbfcy5plogcy3slide603norm

mc2155.pMind..vs.mc2155.pMind.6189.replicate.3

WT.vs..DamtR.N.surplus_dyeswap_rep2

WT.vs..DglnR.N_starvation_rep2

Log.phase.cultures.induced.to.express.I.SceI.for.45.minutes..T.45...ATc.

DglnR_without.vs..with.N_dyeswap_rep1

Wild.type.rep1.y

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep2

BatchCulture_LBTbroth_StationaryPhase_Replicate2

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep4

BatchCulture_LBTbroth_StationaryPhase_Replicate1

M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep3

M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep2

X4dbfcy3plogcy5slide903norm

Biological.replicate.6.of.7..panaxydol.treatment

Comments