Module 97 Residual: 0.55
Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)

Residual Motif 1 e-value Motif 2 e-value Conditions Genes version
0.55 2.8e-17 0.000019 74 30 20160204
Motif 1
e-value: 2.8e-17
e-value: 0.000019
MSMEG_4238 Uncharacterized protein MSMEG_2920 Aldo/keto reductase
MSMEG_4074 Peroxisomal trans-2-enoyl-CoA reductase (EC 1.3.1.38) MSMEG_6126 D-isomer specific 2-hydroxyacid dehydrogenase
MSMEG_6886 Transcriptional regulator (Transcriptional regulator, HxlR family) MSMEG_4479 Uncharacterized protein
MSMEG_6887 Amidohydrolase family protein MSMEG_6643 DNA-binding protein (Transcriptional regulator, XRE family)
MSMEG_6790 AP endonuclease, family protein 2 (Xylose isomerase-like TIM barrel) MSMEG_2548 3-oxoacyl-[acyl-carrier-protein] reductase (EC 1.1.1.100) (Short-chain dehydrogenase/reductase SDR)
MSMEG_4075 CoA-binding protein MSMEG_6789 Transcriptional regulator, GntR family protein
MSMEG_6791 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) (3-hydroxybutyryl-CoA dehydrogenase) MSMEG_6645 2-methylcitrate dehydratase 1 (EC 4.2.1.79) (2-methylcitrate dehydratase 2)
MSMEG_0415 Flavin reductase-like, FMN-binding protein (NADH-fmn oxidoreductase) MSMEG_2547 Transcriptional regulator
MSMEG_0414 Oxidoreductase, 2OG-Fe(II) oxygenase family protein MSMEG_4008 2OG-Fe(II) oxygenase (Oxidoreductase, 2OG-Fe(II) oxygenase family protein)
MSMEG_1717 ISMsm8, transposase MSMEG_5929 Uncharacterized protein
MSMEG_3846 Phosphotransferase enzyme family protein MSMEG_4964 Transcriptional regulator, TetR family protein
MSMEG_5797 Uncharacterized protein MSMEG_4985 Carbonic anhydrase (EC 4.2.1.1) (Carbonate dehydratase)
MSMEG_3491 Uncharacterized protein MSMEG_3853 Aliphatic sulfonates import ATP-binding protein SsuB (EC 3.6.3.-)
MSMEG_3492 Phosphodiesterase (Type I phosphodiesterase/nucleotide pyrophosphatase) MSMEG_3854 Aliphatic sulfonates ABC transporter, permease protein (Putative aliphatic sulfonates transport permease protein SsuC)
MSMEG_2921 NADPH-flavin oxidoreductase (EC 1.6.99.-) (Nitroreductase) (EC 1.6.99.3) MSMEG_3876 Phosphotransferase enzyme family protein, putative
Wild.type.rep1.y
Bedaquiline.vs..DMSO.30min
WT.vs..DamtR.without.N_rep1
Stationary.cultures.induced.to.express.I.SceI.for.45.minutes..T.45...ATc.
WT.vs..DamtR.without.N_rep2
Mycobacterium.smegmatis.Spheroplast.induced
X4XR.rep1
Biological.replicate.1.of.6..negative.control
dosR.WT_Replicate1
Biological.replicate.2.of.6..kanamycin.treatment
Wild.type.rep2.y
Plogcy5plogcy3slide110norm
Biological.replicate.7.of.7..falcarinol.treatment
MB100pruR.vs..MB100.rep.2
MB100pruR.vs..MB100.rep.1
Biological.replicate.1.of.6..isoniazid.treatment
Biological.replicate.7.of.7..ethambutol.treatment
Bedaquiline.vs..DMSO.60min
WT.with.vs..without.N_dye.swap_rep1
rel.knockout.rep2
rel.knockout.rep1
Biological.replicate.6.of.6..negative.control
Biological.replicate.4.of.6..kanamycin.treatment
Biological.replicate.3.of.6..isoniazid.treatment
DglnR_without.vs..with.N_rep1
X0.6..vs..50..air.saturation.Replicate.4
M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep2
mc2155.vs.Dcrp1.replicate.3
Biological.replicate.1.of.6..kanamycin.treatment
mc2155.vs.Dcrp1.replicate.4
Biological.replicate.3.of.6..negative.control
dcpA.knockout.rep2
Stationary.cultures.control.without.induction.of.I.SceI.expression..T.0...Atc.
Biological.replicate.2.of.6..isoniazid.treatment
X2.5..vs..50..air.saturation.Replicate.4
X2.5..vs..50..air.saturation.Replicate.5
X3dbfcy3plogcy5slide607norm
WT_log.phase_rep1
Biological.replicate.4.of.7..panaxydol.treatment
X2.5..vs..50..air.saturation.Replicate.2
X2.5..vs..50..air.saturation.Replicate.3
WT_stationary.phase_rep2
Biological.replicate.1.of.7..ethambutol.treatment
X4XR.rep2
DamtR.with.vs..DamtR.without.N_dyeswap_.rep1
Biological.replicate.5.of.7..ethambutol.treatment
Tet.CarD.vs.Control..Replicates.1..2..and.3.
Slow.vs..Fast.Replicate.5
WT.with.vs..without.N_dye.swap_rep2
Biological.replicate.4.of.7..falcarinol.treatment
WT.vs..DglnR.N_starvation_dye.swap_rep1
Slow.vs..Fast.Replicate.2
Biological.replicate.3.of.6..kanamycin.treatment
BatchCulture_LBTbroth_ExponentialPhase_Replicate2
Biological.replicate.5.of.6..kanamycin.treatment
mc2155.pMind..vs.mc2155.pMind.6189.replicate.2
mc2155.pMind..vs.mc2155.pMind.6189.replicate.3
BatchCulture_LBTbroth_ExponentialPhase_Replicate4
WT.vs..DamtR.N.surplus_.dyeswap_rep1
WT.with.vs..without.N_rep2
Log.phase.cultures.without.induction.of.I.SceI.expression..T.0...Atc.
WT.with.vs..without.N_rep1
X2XR.rep1
X2XR.rep2
mc2155.pMind..vs.mc2155.pMind.6189.replicate.1
WT.vs..DglnR.N_starvation_dye.swap_rep2
JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep3
JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep2
JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep4
BatchCulture_LBTbroth_StationaryPhase_Replicate1
M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep3
M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep2
M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep1
X4dbfcy3plogcy5slide903norm
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