Module 97 Residual: 0.55Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)

Summary

Residual	Motif 1 e-value	Motif 2 e-value	Conditions	Genes	version
0.55	2.8e-17	0.000019	74	30	20160204

Motifs

Motif 1
	e-value: 2.8e-17
Motif 2
	e-value: 0.000019

Module Plots

Members

MSMEG_4238 Uncharacterized protein	MSMEG_2920 Aldo/keto reductase
MSMEG_4074 Peroxisomal trans-2-enoyl-CoA reductase (EC 1.3.1.38)	MSMEG_6126 D-isomer specific 2-hydroxyacid dehydrogenase
MSMEG_6886 Transcriptional regulator (Transcriptional regulator, HxlR family)	MSMEG_4479 Uncharacterized protein
MSMEG_6887 Amidohydrolase family protein	MSMEG_6643 DNA-binding protein (Transcriptional regulator, XRE family)
MSMEG_6790 AP endonuclease, family protein 2 (Xylose isomerase-like TIM barrel)	MSMEG_2548 3-oxoacyl-[acyl-carrier-protein] reductase (EC 1.1.1.100) (Short-chain dehydrogenase/reductase SDR)
MSMEG_4075 CoA-binding protein	MSMEG_6789 Transcriptional regulator, GntR family protein
MSMEG_6791 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) (3-hydroxybutyryl-CoA dehydrogenase)	MSMEG_6645 2-methylcitrate dehydratase 1 (EC 4.2.1.79) (2-methylcitrate dehydratase 2)
MSMEG_0415 Flavin reductase-like, FMN-binding protein (NADH-fmn oxidoreductase)	MSMEG_2547 Transcriptional regulator
MSMEG_0414 Oxidoreductase, 2OG-Fe(II) oxygenase family protein	MSMEG_4008 2OG-Fe(II) oxygenase (Oxidoreductase, 2OG-Fe(II) oxygenase family protein)
MSMEG_1717 ISMsm8, transposase	MSMEG_5929 Uncharacterized protein
MSMEG_3846 Phosphotransferase enzyme family protein	MSMEG_4964 Transcriptional regulator, TetR family protein
MSMEG_5797 Uncharacterized protein	MSMEG_4985 Carbonic anhydrase (EC 4.2.1.1) (Carbonate dehydratase)
MSMEG_3491 Uncharacterized protein	MSMEG_3853 Aliphatic sulfonates import ATP-binding protein SsuB (EC 3.6.3.-)
MSMEG_3492 Phosphodiesterase (Type I phosphodiesterase/nucleotide pyrophosphatase)	MSMEG_3854 Aliphatic sulfonates ABC transporter, permease protein (Putative aliphatic sulfonates transport permease protein SsuC)
MSMEG_2921 NADPH-flavin oxidoreductase (EC 1.6.99.-) (Nitroreductase) (EC 1.6.99.3)	MSMEG_3876 Phosphotransferase enzyme family protein, putative

Conditions

Wild.type.rep1.y

Bedaquiline.vs..DMSO.30min

WT.vs..DamtR.without.N_rep1

Stationary.cultures.induced.to.express.I.SceI.for.45.minutes..T.45...ATc.

WT.vs..DamtR.without.N_rep2

Mycobacterium.smegmatis.Spheroplast.induced

X4XR.rep1

Biological.replicate.1.of.6..negative.control

dosR.WT_Replicate1

Biological.replicate.2.of.6..kanamycin.treatment

Wild.type.rep2.y

Plogcy5plogcy3slide110norm

Biological.replicate.7.of.7..falcarinol.treatment

MB100pruR.vs..MB100.rep.2

MB100pruR.vs..MB100.rep.1

Biological.replicate.1.of.6..isoniazid.treatment

Biological.replicate.7.of.7..ethambutol.treatment

Bedaquiline.vs..DMSO.60min

WT.with.vs..without.N_dye.swap_rep1

rel.knockout.rep2

rel.knockout.rep1

Biological.replicate.6.of.6..negative.control

Biological.replicate.4.of.6..kanamycin.treatment

Biological.replicate.3.of.6..isoniazid.treatment

DglnR_without.vs..with.N_rep1

X0.6..vs..50..air.saturation.Replicate.4

M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep2

mc2155.vs.Dcrp1.replicate.3

Biological.replicate.1.of.6..kanamycin.treatment

mc2155.vs.Dcrp1.replicate.4

Biological.replicate.3.of.6..negative.control

dcpA.knockout.rep2

Stationary.cultures.control.without.induction.of.I.SceI.expression..T.0...Atc.

Biological.replicate.2.of.6..isoniazid.treatment

X2.5..vs..50..air.saturation.Replicate.4

X2.5..vs..50..air.saturation.Replicate.5

X3dbfcy3plogcy5slide607norm

WT_log.phase_rep1

Biological.replicate.4.of.7..panaxydol.treatment

X2.5..vs..50..air.saturation.Replicate.2

X2.5..vs..50..air.saturation.Replicate.3

WT_stationary.phase_rep2

Biological.replicate.1.of.7..ethambutol.treatment

X4XR.rep2

DamtR.with.vs..DamtR.without.N_dyeswap_.rep1

Biological.replicate.5.of.7..ethambutol.treatment

Tet.CarD.vs.Control..Replicates.1..2..and.3.

Slow.vs..Fast.Replicate.5

WT.with.vs..without.N_dye.swap_rep2

Biological.replicate.4.of.7..falcarinol.treatment

WT.vs..DglnR.N_starvation_dye.swap_rep1

Slow.vs..Fast.Replicate.2

Biological.replicate.3.of.6..kanamycin.treatment

BatchCulture_LBTbroth_ExponentialPhase_Replicate2

Biological.replicate.5.of.6..kanamycin.treatment

mc2155.pMind..vs.mc2155.pMind.6189.replicate.2

mc2155.pMind..vs.mc2155.pMind.6189.replicate.3

BatchCulture_LBTbroth_ExponentialPhase_Replicate4

WT.vs..DamtR.N.surplus_.dyeswap_rep1

WT.with.vs..without.N_rep2

Log.phase.cultures.without.induction.of.I.SceI.expression..T.0...Atc.

WT.with.vs..without.N_rep1

X2XR.rep1

X2XR.rep2

mc2155.pMind..vs.mc2155.pMind.6189.replicate.1

WT.vs..DglnR.N_starvation_dye.swap_rep2

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep3

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep2

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep4

BatchCulture_LBTbroth_StationaryPhase_Replicate1

M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep3

M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep2

M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep1

X4dbfcy3plogcy5slide903norm

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