Module 119 Residual: 0.54Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)

Summary

Residual	Motif 1 e-value	Motif 2 e-value	Conditions	Genes	version
0.54	1.5e-17	0.0000039	76	29	20160204

Motifs

Motif 1
	e-value: 1.5e-17
Motif 2
	e-value: 0.0000039

Module Plots

Members

MSMEG_2952 Major facilitator superfamily MFS_1 (Transport protein)	MSMEG_4367 Formamidase (EC 3.5.1.49)
MSMEG_2831 Uncharacterized protein	MSMEG_3949 Uncharacterized protein
MSMEG_6053 Cob(II)yrinic acid a,c-diamide reductase (EC 1.16.8.1)	MSMEG_6255 Uncharacterized protein
MSMEG_5408 Prolipoprotein diacylglyceryl transferase (EC 2.4.99.-)	MSMEG_6665 Integral membrane protein (Uncharacterized protein)
MSMEG_3548 ABC amino acid transporter, permease component (Ectoine/hydroxyectoine ABC transporter, permease protein EhuC)	MSMEG_3517 HAD-superfamily protein subfamily protein IB hydrolase
MSMEG_3549 ABC amino acid transporter, permease component (Ectoine/hydroxyectoine ABC transporter, permease protein EhuD)	MSMEG_6767 Mycocerosic acid synthase (EC 2.3.1.111)
MSMEG_5361 Uncharacterized protein	MSMEG_0705 Major facilitator superfamily MFS_1 (Putative permease of the major facilitator superfamily protein)
MSMEG_1368 DNA-directed RNA polymerase subunit beta' (RNAP subunit beta') (EC 2.7.7.6) (RNA polymerase subunit beta') (Transcriptase subunit beta')	MSMEG_3550 ABC amino acid transporter, ATPase component (EC 3.6.3.21) (Ectoine/hydroxyectoine ABC transporter, ATP-binding protein)
MSMEG_6256 Aspartate-semialdehyde dehydrogenase (ASA dehydrogenase) (ASADH) (EC 1.2.1.11) (Aspartate-beta-semialdehyde dehydrogenase)	MSMEG_1811 Maf-like protein MSMEG_1811/MSMEI_1767
MSMEG_3986 Acetyl-coenzyme A synthetase (EC 6.2.1.1) (Putative acetate--CoA ligase)	MSMEG_3518 Glyoxalase family protein (Uncharacterized protein)
MSMEG_0215 Pirin-like protein (YhhW family protein)	MSMEG_5806 Uncharacterized protein
MSMEG_6258 Nitroreductase family protein	MSMEG_0757 Uncharacterized protein
MSMEG_1367 DNA-directed RNA polymerase subunit beta (RNAP subunit beta) (EC 2.7.7.6) (RNA polymerase subunit beta) (Transcriptase subunit beta)	MSMEG_3547 Ectoine/hydroxyectoine ABC transporter solute-binding protein
MSMEG_1089 Uncharacterized protein	MSMEG_2476 MarR family protein transcriptional regulatory protein (Transcriptional regulator, MarR family)
MSMEG_4369 Uncharacterized protein

Conditions

KO_stationary.phase_rep1

KO_stationary.phase_rep2

Stationary.cultures.induced.to.express.I.SceI.for.45.minutes..T.45...ATc.

dcpA.knockout.rep2

M..smegmatis.Acid.NO.treated

Biological.replicate.3.of.7..falcarinol.treatment

Biological.replicate.1.of.6..negative.control

MB100pruR.vs..MB100..rep.3

Tet.CarD.vs.Control..Replicates.1..2..and.3.

KO_log.phase_rep2

KO_log.phase_rep1

Wild.type.rep1.y

DglnR_without.vs..with.N_rep2

Biological.replicate.3.of.7..panaxydol.treatment

Biological.replicate.6.of.6..negative.control

Biological.replicate.2.of.7..panaxydol.treatment

Biological.replicate.7.of.7..ethambutol.treatment

Biological.replicate.1.of.7..ethambutol.treatment

Biological.replicate.3.of.7..ethambutol.treatment

rel.knockout.rep2

rel.knockout.rep1

Bedaquiline.vs..DMSO..45min

Biological.replicate.1.of.7..falcarinol.treatment

Biological.replicate.6.of.7..panaxydol.treatment

Bedaquiline.vs..DMSO.15min

DamtR.with.vs..DamtR.without.N_.rep1

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep3

Biological.replicate.3.of.6..isoniazid.treatment

DamtR.with.vs..DamtR.without.N_.rep2

X3dbfcy5plogcy3slide601norm

X0.6..vs..50..air.saturation.Replicate.3

X0.6..vs..50..air.saturation.Replicate.2

X0.6..vs..50..air.saturation.Replicate.5

WT.vs..DglnR.N_starvation_dye.swap_rep2

M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep3

M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep1

Wild.type.rep2.y

Biological.replicate.5.of.6..kanamycin.treatment

Biological.replicate.2.of.7..ethambutol.treatment

Plogcy5plogcy3slide113norm

WT.vs..DamtR.N.surplus_rep2

Biological.replicate.5.of.7..panaxydol.treatment

dcpA.knockout.rep1

Biological.replicate.2.of.7..falcarinol.treatment

Plogcy5plogcy3slide111norm

X2.5..vs..50..air.saturation.Replicate.4

Biological.replicate.4.of.7..ethambutol.treatment

stphcy3plogcy5slide581norm

X2.5..vs..50..air.saturation.Replicate.2

X4XR.rep2

DamtR.with.vs..DamtR.without.N_dyeswap_.rep1

dosR.WT_Replicate2

Slow.vs..Fast.Replicate.4

Stationary.cultures.control.without.induction.of.I.SceI.expression..T.0...Atc.

WT.vs..DglnR.N_starvation_dye.swap_rep1

Biological.replicate.6.of.7..ethambutol.treatment

Biological.replicate.7.of.7..panaxydol.treatment

BatchCulture_LBTbroth_ExponentialPhase_Replicate2

dosR.WT_Replicate3

X3dbfcy5plogcy3slide603norm

BatchCulture_LBTbroth_ExponentialPhase_Replicate1

X4dbfcy5plogcy3slide901norm

WT.vs..DamtR.N.surplus_.dyeswap_rep1

WT.vs..DglnR.N_starvation_rep1

WT.vs..DglnR.N_starvation_rep2

X2XR.rep1

X2XR.rep2

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep1

BatchCulture_LBTbroth_StationaryPhase_Replicate4

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep2

BatchCulture_LBTbroth_StationaryPhase_Replicate2

BatchCulture_LBTbroth_StationaryPhase_Replicate1

M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep3

M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep2

Biological.replicate.4.of.6..kanamycin.treatment

Bedaquiline.vs..DMSO.120min

Comments